PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 639aa    MW: 72431.5 Da    PI: 6.5883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1188genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.66.9e-1192666353374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cA+av+ +d++ a++lL+++s+++s +gd +qR a+yf+ AL +rla+++   y+ l +++ts    ++ l+a+++++ ++P+ k+ h+ aN+
  Gh_D03G1188 266 SLLTQCAQAVAINDQRTANELLKQISQNSSTTGDGTQRFAHYFADALTTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLVLACPFKKMMHFYANK 360
                  79*********************************************************999988888...9************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++
  Gh_D03G1188 361 KIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFKVPFEYNV-IAKKWETIQLEELKI 457
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  k++E+++Vn++++l++l+d+++s +s+rd vLkl++s++P+ +++  ++  +n++ F++rf eal ++sa+fd +ea++pr++ +r++ Ere+lgr+i
  Gh_D03G1188 458 KKDEVVIVNCMYRLKNLPDDTLSPTSARDIVLKLIRSINPEFFIHGISNGTYNAPFFVTRFREALFHFSAIFDIFEANVPRDDPQRMMFEREILGRDI 555
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg er+er et+++W++r  +aGFk++pl+++ +k++  +++  + + + ++ +  ++++gWk+r ++++S+W+
  Gh_D03G1188 556 MNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQELVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKGRVIFALSCWK 635
                  ***************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.48238615IPR005202Transcription factor GRAS
PfamPF035142.4E-116266635IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MDTTLFQDFP SSMYGFKLDH GAVPVYSIHD FVSNNNGFIK DSPPQVVPSP DSPVESGTTT  60
NSEAHPLDSI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS  120
TDPIPAYTDQ NGGSPGDFNS SLIQTSLVDT LERTSLFPDL QRGIPPSIEP SGSSLLGSKG  180
RKNYERGDVD DLEQGRSNKQ FAVSLEDSEQ TDMFDDVLLC KGENEDDPRC SLNKSSQHVW  240
PQKGTSKGGT ARRKNGKKSE VVDLWSLLTQ CAQAVAINDQ RTANELLKQI SQNSSTTGDG  300
TQRFAHYFAD ALTTRLAGMG APSYSPLVSN RTSAADILKA YRVLVLACPF KKMMHFYANK  360
KIMKVAEKAT TLHIVDFGIC YGFQWPCLIQ RLSARAGGPP KLRITGIEFP QPGFRPAERV  420
EETGRRLKRY CERFKVPFEY NVIAKKWETI QLEELKIKKD EVVIVNCMYR LKNLPDDTLS  480
PTSARDIVLK LIRSINPEFF IHGISNGTYN APFFVTRFRE ALFHFSAIFD IFEANVPRDD  540
PQRMMFEREI LGRDIMNVVA CEGIERVERP ETYKQWQART LRAGFKQIPL DQELVKKVTN  600
MVQSNYHRDF IIDVDGRWML QGWKGRVIFA LSCWKPMKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-532686358375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27180.0ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740415.10.0PREDICTED: scarecrow-like protein 30
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A1U8NNI70.0A0A1U8NNI7_GOSHI; scarecrow-like protein 30
STRINGGorai.003G130400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein