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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D03G1188 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 639aa MW: 72431.5 Da PI: 6.5883 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 388.6 | 6.9e-119 | 266 | 635 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+lL++cA+av+ +d++ a++lL+++s+++s +gd +qR a+yf+ AL +rla+++ y+ l +++ts ++ l+a+++++ ++P+ k+ h+ aN+
Gh_D03G1188 266 SLLTQCAQAVAINDQRTANELLKQISQNSSTTGDGTQRFAHYFADALTTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLVLACPFKKMMHFYANK 360
79*********************************************************999988888...9************************** PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++
Gh_D03G1188 361 KIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFKVPFEYNV-IAKKWETIQLEELKI 457
****************************************************9****************************9.7************** PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
k++E+++Vn++++l++l+d+++s +s+rd vLkl++s++P+ +++ ++ +n++ F++rf eal ++sa+fd +ea++pr++ +r++ Ere+lgr+i
Gh_D03G1188 458 KKDEVVIVNCMYRLKNLPDDTLSPTSARDIVLKLIRSINPEFFIHGISNGTYNAPFFVTRFREALFHFSAIFDIFEANVPRDDPQRMMFEREILGRDI 555
************************************************************************************************** PP
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+nvvaceg er+er et+++W++r +aGFk++pl+++ +k++ +++ + + + ++ + ++++gWk+r ++++S+W+
Gh_D03G1188 556 MNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQELVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKGRVIFALSCWK 635
***************************************************999*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 66.48 | 238 | 615 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.4E-116 | 266 | 635 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 639 aa Download sequence Send to blast |
MDTTLFQDFP SSMYGFKLDH GAVPVYSIHD FVSNNNGFIK DSPPQVVPSP DSPVESGTTT 60 NSEAHPLDSI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS 120 TDPIPAYTDQ NGGSPGDFNS SLIQTSLVDT LERTSLFPDL QRGIPPSIEP SGSSLLGSKG 180 RKNYERGDVD DLEQGRSNKQ FAVSLEDSEQ TDMFDDVLLC KGENEDDPRC SLNKSSQHVW 240 PQKGTSKGGT ARRKNGKKSE VVDLWSLLTQ CAQAVAINDQ RTANELLKQI SQNSSTTGDG 300 TQRFAHYFAD ALTTRLAGMG APSYSPLVSN RTSAADILKA YRVLVLACPF KKMMHFYANK 360 KIMKVAEKAT TLHIVDFGIC YGFQWPCLIQ RLSARAGGPP KLRITGIEFP QPGFRPAERV 420 EETGRRLKRY CERFKVPFEY NVIAKKWETI QLEELKIKKD EVVIVNCMYR LKNLPDDTLS 480 PTSARDIVLK LIRSINPEFF IHGISNGTYN APFFVTRFRE ALFHFSAIFD IFEANVPRDD 540 PQRMMFEREI LGRDIMNVVA CEGIERVERP ETYKQWQART LRAGFKQIPL DQELVKKVTN 600 MVQSNYHRDF IIDVDGRWML QGWKGRVIFA LSCWKPMKN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 7e-53 | 268 | 635 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.2718 | 0.0 | ovule | ||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016740415.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
| Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
| TrEMBL | A0A1U8NNI7 | 0.0 | A0A1U8NNI7_GOSHI; scarecrow-like protein 30 | ||||
| STRING | Gorai.003G130400.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3646 | 25 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G59450.1 | 0.0 | GRAS family protein | ||||




