PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1218

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 277aa MW: 29967.3 Da PI: 9.4104

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1218	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	67	127	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk++ Gh_D03G1218 67 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNK 127 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-34	51	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MVFSSLPVYL DPPNWQQQHN DHQQGTGGSE NPQLPPPPPH VGAGGGTIAI RPSSMADRAR 60 LAKVPQPEAA LKCPRCDSTN TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC 120 RRNKKNKSST SSKSPASTQK QAEVITAHNL PQQTPHLPFM ASLQSFSQYG LGNIGLNYGG 180 SGQADIGFPL FEPSNGLYPF ESEGIEASSS SMVGESQFLG SMSSSSRASQ LAPPMKTENN 240 NNNNKGLNPS RPQLGISENN QYWGGNSWTD ISANHLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471355.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A0D2QJV7	0.0	A0A0D2QJV7_GOSRA; Uncharacterized protein
STRING	Gorai.003G133200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-47	OBF-binding protein 3