PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1383

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 223aa MW: 24098.4 Da PI: 8.4862

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1383	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.8	1.3e-41	40	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l++el++++ Gh_D03G1383 40 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQNLQSELNAIR 137 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Gh_D03G1383 138 AE 139 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.85	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-42	40	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSRDWERLDE IGKKIKTDAV GEMGRRHLLG PPGTLNTITP CAACKLLRRR CAEECPFSPY 60 FSPHEPHKFA AVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV 120 TLQQQMQNLQ SELNAIRAEI LKYKIREVTN SNILPSTHPH THTHATLVSG GAVSVAASSS 180 PLPPPPSIVV STSSSSSASS LYTSATSATG YSSISSDNVP FFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	32	148	3	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	32	148	3	119	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471717.1	1e-163	PREDICTED: LOB domain-containing protein 15
Refseq	XP_016713515.1	1e-163	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	4e-80	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A0D2RN13	1e-162	A0A0D2RN13_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LG24	1e-162	A0A1U8LG24_GOSHI; LOB domain-containing protein 15-like
STRING	Gorai.003G151800.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-80	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]