PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1392
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 761aa    MW: 84006.5 Da    PI: 6.8817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1392genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.7e-19229328198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv+
  Gh_D03G1392 229 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVNGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID-PGGKLVM 324
                  99**************************555556677***************9989999999***9.********************887.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Gh_D03G1392 325 GFRK 328
                  7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-21226329IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-30226331IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-24227328No hitNo description
PfamPF023622.9E-16229328IPR003340B3 DNA binding domain
SMARTSM010192.5E-23229329IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152229330IPR003340B3 DNA binding domain
PROSITE profilePS5105014.275457507IPR011124Zinc finger, CW-type
PfamPF074961.8E-10462504IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
THGDEIPEGV GAVPMNNAGS SAVEGKAVSD HVDERTLAPL CKSMEANECN LLPQSQRGDA  60
NASLGQHRGE EVICPTEKVG AGFSNATQPY VRPANFAKLD IARSALDVRD IQDSLPQPYL  120
SMSLGGSSAN PNFLLPFSSG LADGKEPSKT WSSFQQGQQS RRILPKPSKN GLTTSSELNK  180
GMIPQARITR PPVEGRGKNH LLPRYWPRIT DQELQKLSGD LKSTIVPLFE KVLSASDAGR  240
IGRLVLPKAC AEAYFPPISQ SEGLPLRIQD VNGKEWTFQF RFWPNNNSRM YVLEGVTPCI  300
QSMQLRAGDT VTFSRIDPGG KLVMGFRKAA NSDTQTPKGG KDLLGNALSE HFGLPDGNIS  360
RSRDEDHGVR ANENSVHQLA MNAEKKKTRN IGSKSKRLLM HSVDALELRL TWEEAQDLLR  420
PPPSVRPSIV TIEDHEFEEY DEPPVFGKRT IFGAWPSGEQ EQWAQCDDCS KWRRLPVDVL  480
LPSKWKCSDN VWDSSRCACS APEETGPKEL ENILKVGTDL KKAKVQESPK VAPEPEPTGL  540
DALASAAVLG DKMGDVGESS VGATTKHPRH RPGCTCIVCI QPPSGKGKHK ANCTCNVCLT  600
VKRRFKTLML RKKKRQSEHE AEISERDNKK QMDETELKDT RNDHSENEGS RSRIEREVAE  660
ASTGEIDLNC HPIREDVQLE GGLNMMSFVE ATSLPVENYI KQNGIESLKT EQQQQGSLGS  720
HFQSKVNREN ERPLSDEEFL ASVGWEHVGH KGPSLERNSL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-712073321126B3 domain-containing transcription repressor VAL1
5yzz_C5e-712073321126B3 domain-containing transcription repressor VAL1
5z00_C5e-712073321126B3 domain-containing transcription repressor VAL1
5z00_G5e-712073321126B3 domain-containing transcription repressor VAL1
5z00_K5e-712073321126B3 domain-containing transcription repressor VAL1
5z00_M5e-712073321126B3 domain-containing transcription repressor VAL1
6j9a_A5e-712073322127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1601612KRRFKTLMLRKK
2601614KRRFKTLMLRKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.194550.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738507130.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5814787e-83JX581478.1 Gossypium hirsutum clone NBRI_GE14122 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713621.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1U8LG910.0A0A1U8LG91_GOSHI; B3 domain-containing transcription repressor VAL1-like
STRINGGorai.003G152700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]