PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1486
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 201aa    MW: 22208 Da    PI: 5.1826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1486genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-174089255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++GVr++k  ++Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++++g
  Gh_D03G1486 40 IFRGVRQRK-VNKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALAFRG 89
                 59*******.7*********8...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-293999No hitNo description
PfamPF008474.3E-133989IPR001471AP2/ERF domain
SMARTSM003808.1E-3040103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-304099IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-214099IPR016177DNA-binding domain
PROSITE profilePS5103221.2984097IPR001471AP2/ERF domain
PRINTSPR003672.9E-74152IPR001471AP2/ERF domain
PRINTSPR003672.9E-76379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAAETAETPS SSSEEVYSLA TSKPKKRAGR RIFKETRHPI FRGVRQRKVN KWVCELREPN  60
KKTRIWLGTY PTPEMAARAH DVAALAFRGK SACLNFADSV WKLPLPASMD AIDIRRAAVE  120
AAEAFRPKES EEPLGGGGTR QGSVEACSSG VEVNFVDEEA MFDMPNLLAS MAEGLLLSPP  180
RSTNRDDDDD DSDIDVSLWS Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332540.0KR233254.1 Gossypium barbadense C-repeat binding factor 5-like protein (CBF5L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716074.11e-145PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ934e-65DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0N7FE841e-145A0A0N7FE84_GOSBA; C-repeat binding factor 5-like protein
STRINGGorai.003G162700.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-58C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]