PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1542
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 446aa    MW: 51540 Da    PI: 7.0381
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1542genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.47.9e-55892163129
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   GfrFhPtdeelv++yL+kk+++kk++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s + 
  Gh_D03G1542  89 DGFRFHPTDEELVNYYLRKKIASKKIDL-DVIKDVDLYKIEPWDLQElcRIGSeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKPIYS-RL 184
                  6***************************.9***************954555552556**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  +l+g++ktLvfykgrap+g+k+dW+mheyrle
  Gh_D03G1542 185 SLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 216
                  9*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF814831.96E-251493IPR000484Photosynthetic reaction centre, L/M
Gene3DG3DSA:1.20.85.103.9E-151793IPR000484Photosynthetic reaction centre, L/M
PfamPF001241.6E-172693IPR000484Photosynthetic reaction centre, L/M
SuperFamilySSF1019411.16E-5984236IPR003441NAC domain
PROSITE profilePS5100558.46887236IPR003441NAC domain
PfamPF023651.8E-2790215IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009772Biological Processphotosynthetic electron transport in photosystem II
GO:0003677Molecular FunctionDNA binding
GO:0045156Molecular Functionelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MVYMRRVLFK TSGPLRETIS VDEWLYSGGP YELIVLHFLV GVACYMCRER ELSFRLSMHL  60
WIIVAYSIPV ATATAIFLIY SSGQGSFSDG FRFHPTDEEL VNYYLRKKIA SKKIDLDVIK  120
DVDLYKIEPW DLQELCRIGS EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKPI  180
YSRLSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT  240
VRKMGEYESS CWYDDQVSFI QELESPRRIT QPYVAAAATT YHHHHHFPCK QELELQYNFP  300
HDPFLQLPQL ESPKVPQSTA PSISCNSVIP YNGTSTLQSS TLTHEEHLHN LNSLYNNNTI  360
DQQQQAVDQV TDWRVLDKFV ASQLSHEEGS KENNYTTNAA AAAATSYHVA EQINLPTNES  420
KRADIGHHHQ EYASTSTSSC QIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-488623714169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472250.0KC847225.1 Gossypium hirsutum NAC domain protein NAC48 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471965.10.0PREDICTED: NAC domain-containing protein 7 isoform X1
SwissprotQ9FWX21e-150NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0D2QM170.0A0A0D2QM17_GOSRA; Uncharacterized protein
STRINGGorai.003G169000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-127NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]