PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1558

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 627aa MW: 70370.3 Da PI: 5.3473

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1558	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	318.3	1.6e-97	266	626	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L ++Ae+v++g+++ aq +Larl++l sp g+++qR+ +yf+eAL+ l+ ++ +++ ++ +++ ++ a+k+fsevsP+++f ++t N Gh_D03G1558 266 LDQLCKVAEMVETGNFSHAQGILARLNHL-SPVGKTFQRIGFYFKEALQLLLLM----YNNTPVSKNPTPFDVIFKMGAYKVFSEVSPFVQFVNFTSN 358 679**********************98.799****************8....33344555666667********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeL 194 qa lea+e+++r+H++Dfdi+ G+QW++++q+L R++g pslRiT+++s ++ + el ++e+L++fA+ +gv+fe +vl + l++ +l ++ Gh_D03G1558 359 QAFLEALENSDRIHVVDFDIGFGAQWASFMQELPMRSKGvVPSLRITAFVSLSTYHPIELGLIRENLEQFANGIGVNFELEVLNFDCLDQNpySLPMF 456 *********************************55389*****9999***********************9666555434477788 PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 r++++EalaVn+ + + + l +++L++vk+l+Pk+vv ++ +d+n+ sF +++++a++ y +l++sl+a + +s++ +k+Er+l+ + Gh_D03G1558 457 RMNENEALAVNFPVWSASYR--PSIL----PNLLRIVKQLRPKIVVSLDRGCDRNDLSFPQHIINAFYSYISLLESLDAAVNVTSDAINKIERFLIVP 548 9999*****9776665..4444....56************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i+ v + + e++ W+ + +aGF+p+++s+++++qa++++++ +++g+++e+ ++slvl+W++++L+s+SaWr Gh_D03G1558 549 KIETTVLGRLHS----LEKMPPWKTLFASAGFTPLTFSNFTETQAECVVKRAQVRGFHIEKCHASLVLCWQQKELISASAWR 626 **998887....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.834	239	606	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.6E-95	266	626	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MHFQFQPKVG VELAGFASIY QDKWAKQQED NSFNDQEPTS VLHMRSQSPP TSASTLSSSF 60 NGGSGGGGSG GNFTTTTIVP PESTQLEFQP IQSELDLVTT GPVGVQRCNN LGIEDWEAML 120 FESTVSPSQD QNSLLRWIAG DVDDHGLKQL LQTGPDFIPG LDPMDPGNLG YFPQNPIFTS 180 PPESIGLYQQ LENQEMKPQI LNPPNPNFFL PFPQEQQPLP KRLNHGQIPK LPFSDHELFI 240 KKQQLVGFQE QKPLMVSQQQ QAATLLDQLC KVAEMVETGN FSHAQGILAR LNHLSPVGKT 300 FQRIGFYFKE ALQLLLLMYN NTPVSKNPTP FDVIFKMGAY KVFSEVSPFV QFVNFTSNQA 360 FLEALENSDR IHVVDFDIGF GAQWASFMQE LPMRSKGVVP SLRITAFVSL STYHPIELGL 420 IRENLEQFAN GIGVNFELEV LNFDCLDQNP YSLPMFRMNE NEALAVNFPV WSASYRPSIL 480 PNLLRIVKQL RPKIVVSLDR GCDRNDLSFP QHIINAFYSY ISLLESLDAA VNVTSDAINK 540 IERFLIVPKI ETTVLGRLHS LEKMPPWKTL FASAGFTPLT FSNFTETQAE CVVKRAQVRG 600 FHIEKCHASL VLCWQQKELI SASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MHFQFQPKVG VELAGFASIY QDKWAKQQED NSFNDQEPTS VLHMRSQSPP TSASTLSSSF  60
NGGSGGGGSG GNFTTTTIVP PESTQLEFQP IQSELDLVTT GPVGVQRCNN LGIEDWEAML  120
FESTVSPSQD QNSLLRWIAG DVDDHGLKQL LQTGPDFIPG LDPMDPGNLG YFPQNPIFTS  180
PPESIGLYQQ LENQEMKPQI LNPPNPNFFL PFPQEQQPLP KRLNHGQIPK LPFSDHELFI  240
KKQQLVGFQE QKPLMVSQQQ QAATLLDQLC KVAEMVETGN FSHAQGILAR LNHLSPVGKT  300
FQRIGFYFKE ALQLLLLMYN NTPVSKNPTP FDVIFKMGAY KVFSEVSPFV QFVNFTSNQA  360
FLEALENSDR IHVVDFDIGF GAQWASFMQE LPMRSKGVVP SLRITAFVSL STYHPIELGL  420
IRENLEQFAN GIGVNFELEV LNFDCLDQNP YSLPMFRMNE NEALAVNFPV WSASYRPSIL  480
PNLLRIVKQL RPKIVVSLDR GCDRNDLSFP QHIINAFYSY ISLLESLDAA VNVTSDAINK  540
IERFLIVPKI ETTVLGRLHS LEKMPPWKTL FASAGFTPLT FSNFTETQAE CVVKRAQVRG  600
FHIEKCHASL VLCWQQKELI SASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-35	297	626	36	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20857	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622821	4e-78	JX622821.1 Gossypium hirsutum clone NBRI_GE69712 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472000.1	0.0	PREDICTED: scarecrow-like protein 6
TrEMBL	A0A2P5QSV2	0.0	A0A2P5QSV2_GOSBA; Uncharacterized protein
STRING	Gorai.003G170700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24939	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-110	GRAS family protein