PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1622
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 537aa    MW: 60022.4 Da    PI: 5.9106
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1622genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.1e-28301354155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k +++WtpeLH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQkYR+
  Gh_D03G1622 301 KSKVDWTPELHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRM 354
                  6799*****************.********************************8 PP
2Response_reg21.51.1e-08201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+ d + + ++ l++ le  +y +v ++ d  ea+  +  +   +++ ++ ++  + +G+  +k +++++ +lp i+ +     +++ +++ +Ga 
   Gh_D03G1622  20 ILLLDGDTNSANELKSKLEAMDY-IVYAFHDENEAISAVSSRPesFHVAIVEVSTDNNNGS--FKFLETAK-DLPTIMTSNIHCISTMMKCIARGAV 112
                   6788888899999999*******.***************666666*************997..67777766.999*99999889************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
   Gh_D03G1622 113 EFLKKPLSEDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1316135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-1416150No hitNo description
PROSITE profilePS5011018.27319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.5E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.96E-621131No hitNo description
PROSITE profilePS5129415.164298357IPR017930Myb domain
SuperFamilySSF466891.43E-18299357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27299357IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-25301355IPR006447Myb domain, plants
PfamPF002491.4E-7304353IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MVCTANDLST WKDFPKGLKI LLLDGDTNSA NELKSKLEAM DYIVYAFHDE NEAISAVSSR  60
PESFHVAIVE VSTDNNNGSF KFLETAKDLP TIMTSNIHCI STMMKCIARG AVEFLKKPLS  120
EDKLRNIWQH VVHKAFNTGG NDLTESLQPV KESVVSMLQQ QPENLKPKNE DSETTEDASM  180
IHENDSEPPA GNDKYPAPST PQLEQGGRLL DDRDCQDHTH CSIEKGSGDQ DGEAESVETT  240
GGNTTATGGQ PRGPSETNVK EEDDSVDGTM GESPQNRVDS KGSDVVAEKP SSCPDKANRK  300
KSKVDWTPEL HKKFVQAVDQ LGIDQAIPSR ILELMKVEGL TRHNVASHLQ KYRMQRRHIL  360
PKDDDRRWLQ RPQTQRICNY PHKPIMAFPP YNHVPVGPVY PMWRAPSHPP TIQMWGTQGY  420
PPWQPTESWH WKPYPGVQAD AWGCPVMPPP QGYFSTFPQN ASGFQPCNVD KRNGMPQTLV  480
EHHPEEEVID KMVKEAINKP WLPLPLGLKP PSTDSVLAEL YRQGISTVPP HINASNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17299359363ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.250880.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098879990.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5816581e-122JX581658.1 Gossypium hirsutum clone NBRI_GE14330 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721513.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
RefseqXP_016721514.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-146APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U8M7K20.0A0A1U8M7K2_GOSHI; two-component response regulator-like APRR2 isoform X2
STRINGGorai.003G180100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-147ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]