PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1682
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 142aa    MW: 15922.8 Da    PI: 7.9226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1682genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14361082199
                  HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   f+++hg++  ++   +l  +sg +W+v+l  +k++g+++l++GW eF +   L+ g  +vF++dg+s+f  +v +f+k
  Gh_D03G1682  36 LFVKNHGNSMSSP--AMLSVPSGAVWKVEL--TKSDGKIWLENGWLEFSNHYSLDIGHLLVFRYDGNSNF--RVIIFDK 108
                  5888888775555..9999***********..**********************************9999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-722109IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1835116IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-1237107No hitNo description
PROSITE profilePS5086311.54737109IPR003340B3 DNA binding domain
PfamPF023622.7E-1137108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-1844121IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MASSSHQQGN SHLKFISSSP YSLKIILQDT IQNGKLFVKN HGNSMSSPAM LSVPSGAVWK  60
VELTKSDGKI WLENGWLEFS NHYSLDIGHL LVFRYDGNSN FRVIIFDKSA SEIQYPYTSN  120
NHSRSSEILK LNINESKDDG SI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690612.14e-97PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2QM183e-97A0A0D2QM18_GOSRA; Uncharacterized protein
STRINGGorai.003G020300.15e-98(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-27B3 family protein