PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1683

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 218aa MW: 24911.9 Da PI: 6.2414

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1683	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.4e-17	31	110	17	96
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +f++eh +k+++ +tl ++sg++W +++ +k + +l++GW Fv++n+++++D++ F+l++++e +++v + Gh_D03G1683 31 TIPTEFVREHLMKEHR--SVTLCNSSGKTWIANFKQsqIGKNQYSYLQTGWGTFVRDNNIQVNDVCAFELINSTEISFKVVI 110 7*******878666..59999***9999665444444489**********************987666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	18	No hit	No description
SMART	SM01019	6.4E-9	24	114	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.04E-18	29	112	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-19	30	112	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.1E-15	31	112	IPR003340	B3 DNA binding domain
CDD	cd10017	4.72E-18	31	112	No hit	No description
PROSITE profile	PS50863	13.253	32	114	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MYDRNEQNVS SIFSSTACKV EVCSLIFLLQ TIPTEFVREH LMKEHRSVTL CNSSGKTWIA 60 NFKQSQIGKN QYSYLQTGWG TFVRDNNIQV NDVCAFELIN STEISFKVVI YKGQHANCHQ 120 ILVSEMQYPY TRDNHSQSDE ILEQNIEESE DDDTTEILEV ISPSLKVREE LQSSCPRSHK 180 MMSSTNSAIK TKTVCNGIKG DKRTKSSYNS TVEDTRKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472259.1	1e-118	PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBL	A0A0D2RFB0	1e-134	A0A0D2RFB0_GOSRA; Uncharacterized protein
STRING	Gorai.003G020200.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36330	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	3e-07	B3 family protein