PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1684
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 254aa    MW: 28556.3 Da    PI: 9.426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1684genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.8e-112701987
                 -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
                 p +f++e+ +kk++s  ++l ++sg++W  +++ rk +++   +l +G   F+++n++++gD++ F+l+++
  Gh_D03G1684  2 PCNFVKENLMKKHCS--VILCNSSGKTWIATFKQRKIGKKltSYLIAGCGTFARDNNIQVGDVCAFELINS 70
                 779*****8888886..***************876666666666777********************9874 PP
2B356.55e-18150245199
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+ vl ps+v+ ++ l++p +fa+++   +     +k+++   ++g+sW v +  + + ++  ++l +GW +F+ +n+L++gD++vF+l+g  e++++
  Gh_D03G1684 150 FVIVLQPSHVHGNK-LSVPMNFARKYltmM-----HKKVIHLLSDGNSWPVIY--DPRFEWsyVFLCNGWHRFAVDNNLEVGDVCVFELTGGIETSMK 239
                  55666677777766.***********7532.....235666667*********..999999989999***********************99777799 PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v++++k
  Gh_D03G1684 240 VTIYKK 245
                  999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-14182IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.166183IPR003340B3 DNA binding domain
CDDcd100174.41E-13180No hitNo description
PfamPF023628.2E-9270IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-13280IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.22583IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-25142245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-25143244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-24148244No hitNo description
PROSITE profilePS5086313.465149246IPR003340B3 DNA binding domain
SMARTSM010192.1E-12149246IPR003340B3 DNA binding domain
PfamPF023623.5E-17150245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPCNFVKENL MKKHCSVILC NSSGKTWIAT FKQRKIGKKL TSYLIAGCGT FARDNNIQVG  60
DVCAFELINS IHISFKVVIY QGQHANCHQS LAVTDVFHLV KRKAPSCAKR PVKHKAPSYA  120
SQGCPEPLTA LEKAKAFQMA GAFKSENPFF VIVLQPSHVH GNKLSVPMNF ARKYLTMMHK  180
KVIHLLSDGN SWPVIYDPRF EWSYVFLCNG WHRFAVDNNL EVGDVCVFEL TGGIETSMKV  240
TIYKKQAIED ENLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1512824427141B3 domain-containing transcription factor VRN1
4i1k_B1e-1512824427141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5849079e-83JX584907.1 Gossypium hirsutum clone NBRI_GE18328 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638182.11e-169PREDICTED: B3 domain-containing protein Os03g0619600-like
TrEMBLA0A0D2QEJ11e-180A0A0D2QEJ1_GOSRA; Uncharacterized protein
STRINGGorai.003G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3633122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-16B3 family protein