PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1762
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 481aa    MW: 52917.1 Da    PI: 8.5081
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1762genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.7e-14134172341
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  +k+CnCkk+kClk+YC+Cfaag +C+e C+C++C+N+ e
  Gh_D03G1762 134 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCSCQGCFNRPE 172
                  89**********************************876 PP
2TCR49.11.1e-15220258139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCk+s ClkkYCeC++a++ Cs +C+Ce+CkN 
  Gh_D03G1762 220 RHKRGCNCKRSMCLKKYCECYQANVGCSIRCRCEGCKNV 258
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.1E-14132173IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.793133260IPR005172CRC domain
PfamPF036381.3E-11135170IPR005172CRC domain
SMARTSM011146.7E-17220261IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-11222257IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNMIPQCYGK SSLTVLKPSG VGLHLNSIVN AISMGQGGTA SMKVAQAIKS TSTTSCQSTE  60
NIDNCSDAFE KVSTPQGALE QKVCTIAGSA SESLFAEESV EFHMTPNIKR KFSSEDGDRN  120
DMKKLSNNTD GDCCKRCNCK KTKCLKLYCD CFAAGIYCAE PCSCQGCFNR PEYEETVLET  180
RKQIESRNPL AFAPKIVQPV TEFPLSNRED GNRKTPSSAR HKRGCNCKRS MCLKKYCECY  240
QANVGCSIRC RCEGCKNVYG KKEDYCVTKE MVNRSGEISE SRVAAKPKKE IFHSELCDPY  300
HLTPLTPSVQ CSDHGKNASI SRLFSRRCLP SPESDLTVLS YAKSPRSPRT SDSNDILLET  360
SSPSSKAREL TSLSRVQLDP RRRSLTPGGS LHWHSSPIMP MSPLNDNKKL QGLDSADGGL  420
YDILEDDMPE ILKYTSMPIK PVKAGSPNGK RVSPPHNLHQ LGSSSSGPLR SGRIRFATSY  480
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1913525812121Protein lin-54 homolog
5fd3_B6e-1913525812121Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464904.10.0PREDICTED: CRC domain-containing protein TSO1-like isoform X2
TrEMBLA0A0D2W4Y20.0A0A0D2W4Y2_GOSRA; Uncharacterized protein
STRINGGorai.013G110900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151961015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.17e-50Tesmin/TSO1-like CXC domain-containing protein