PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0086
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 307aa    MW: 33700.8 Da    PI: 8.6788
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0086genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.95.3e-31158214158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  de++YVNaKQy +Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  Gh_D04G0086 158 DETIYVNAKQYGAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 214
                  699***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-36156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.631157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-25160214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-21160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-21191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MESHVQQSSM SESLNLKMGI VPQHFHNSKQ LSFQFQDQDS SSTQSTGQSY PEAASVGDSN  60
LYRQSSISAS SGGNETPGKL VEHHAKLASS MGTQEYVFSP SQVDYSKSIQ AHIPLHYAEP  120
YFGGVVTAVC PPQAMIHHPC MLAMLPARVP LPLELTEDET IYVNAKQYGA ILRRRQYRAK  180
LEAQNKLIKV RKPYLHESRH LHALKRARGN GGRFLNTKKL QESKPIPTSH GLDASRSPQL  240
HLCANMSNQL ENYKDAASTT TCSDVTSASN SDEMLQQPDF RFSGYSSLIV GATRGSGGNL  300
HHLSGCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-19158218262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718942.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_016718943.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_016718945.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X3
RefseqXP_016718946.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X3
SwissprotQ93ZH23e-77NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A1U8LWI20.0A0A1U8LWI2_GOSHI; nuclear transcription factor Y subunit A-3-like isoform X3
TrEMBLA0A1U8LZW80.0A0A1U8LZW8_GOSHI; nuclear transcription factor Y subunit A-3-like isoform X1
STRINGGorai.012G010900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-72nuclear factor Y, subunit A3