PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0248

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 227aa MW: 24888.2 Da PI: 9.3364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0248	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.3e-10	173	220	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gh_D04G0248 173 SHSLAERVRREKIGERIKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 220 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-15	167	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-9	167	224	No hit	No description
PROSITE profile	PS50888	15.358	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-16	169	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	173	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-9	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGRASGDSVL PDMVMARQVK PDPGLESPWP ELGKVDMAAM GFGPCGYGNG PSFDMNHAIS 60 RTSSYPPAVV ATKAVEVKGN YEKMASAVGK ESFNKRKAEK LQNSNVVAEE SKRIKACEDE 120 GEESKITGPN TNKSSNNKKE ASGDASKENS KVFEVQKPDF IHVWARRGQA TDSHSLAERV 180 RREKIGERIK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEVKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23145	4e-64	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:23221598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269\|PubMed:23221598}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532258	1e-141	EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
GenBank	EU532302	1e-141	EU532302.1 Gossypium barbadense clone I11-4 ISSR marker genomic sequence.
GenBank	EU532309	1e-141	EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence.
GenBank	EU532313	1e-141	EU532313.1 Gossypium barbadense clone I11-15 ISSR marker genomic sequence.
GenBank	EU532316	1e-141	EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750993.1	1e-169	PREDICTED: transcription factor HBI1-like
Refseq	XP_016750994.1	1e-169	PREDICTED: transcription factor HBI1-like
Swissprot	Q9ZPW3	5e-45	HBI1_ARATH; Transcription factor HBI1
TrEMBL	A0A1U8PKY5	1e-167	A0A1U8PKY5_GOSHI; transcription factor HBI1-like
STRING	Gorai.012G031100.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5947	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18300.1	2e-47	bHLH family protein