PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0387
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 313aa    MW: 34648 Da    PI: 8.9496
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0387genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.62.8e-31491682108
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i el+ ++ ++ +++ ++++  +++++++++          
  Gh_D04G0387  49 FGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNEAKHEIEELPPLPIPQGNFAlNPQMPLNASQQPNKQdstggfcrak 146
                  689*************************************************************8888777763333333333333333344676665 PP

          TCP  89 ........kaaksaakskksqksaasal 108
                          +      k++k++++a++ +
  Gh_D04G0387 147 skdivresS------KGSKRDEEASEGH 168
                  553333221......2222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-2951173IPR005333Transcription factor, TCP
PROSITE profilePS5136929.56451109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MIPSSEEAGS PIQEGKEDES SNKVRKGAST SSPLLRLKDP RIVRVSRAFG GKDRHSKVFT  60
IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN EAKHEIEELP PLPIPQGNFA  120
LNPQMPLNAS QQPNKQDSTG GFCRAKSKDI VRESSKGSKR DEEASEGHQV QTDYGLQRSN  180
HSLMPAQSNN AVSMPMPMPM PMPMPYGSYY HFEPSNFPLP HLGSHGFVAP QTEEVHNFNV  240
VPLSSTLSLS SGSQNHFQML SSGAQNPFAN PPQYSITQPD LRSFHLSIAP RLLPHSLNIN  300
GSQPGKEDEF PSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1856110155Putative transcription factor PCF6
5zkt_B2e-1856110155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19241e-168leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO827555151e-168
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722273.10.0PREDICTED: transcription factor TCP5-like
SwissprotQ9S7W53e-45TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A1U8M9I30.0A0A1U8M9I3_GOSHI; transcription factor TCP5-like
STRINGGorai.012G048500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-38plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]