PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0450
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 332aa    MW: 38093.1 Da    PI: 7.3041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0450genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.6e-52111381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  + pGfrFhPtdeelv +yLk k+++k+l++ + i+++diyk+ePwdLpk ++++ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++++s+  +
  Gh_D04G0450  11 MLPGFRFHPTDEELVEFYLKSKIQQKSLPI-QLITQLDIYKYEPWDLPKLAASGEKEWYFYCPRDRKYRNSARPNRVTRGGIWKATGTDRPIYSSdAT 107
                  579***************************.89***************8888899***************************************8566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfy+gra kg ktdW+mhe+rl
  Gh_D04G0450 108 KCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 138
                  67***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-569171IPR003441NAC domain
PROSITE profilePS5100555.31811171IPR003441NAC domain
PfamPF023651.4E-2513138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDAVEKVEDV MLPGFRFHPT DEELVEFYLK SKIQQKSLPI QLITQLDIYK YEPWDLPKLA  60
ASGEKEWYFY CPRDRKYRNS ARPNRVTRGG IWKATGTDRP IYSSDATKCI GLKKSLVFYR  120
GRAAKGIKTD WMMHEFRLPS LSDKTLSANV MILIHSLVSN DSWAICKIFR KTNCMAQRAL  180
SHTSIPSDIP HHYGPFNHFN EVQHAQQWTT SPLPVPNGDL HNNYMFLQCT VDTSSVVLSP  240
DATMIADDVR NNSESIDFKG KQQSFNGFSI RLPQDMEGTR NDDGDWGSIP LMGFPFSLSP  300
NVLDSWKPNL PWDTSLYPTE MSTTYSTDRY HT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-511317317170Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458499.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW55e-94NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A0D2TJ270.0A0A0D2TJ27_GOSRA; Uncharacterized protein
STRINGGorai.012G054800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-96NAC domain containing protein 94