PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0624

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 249aa MW: 28502.4 Da PI: 9.7575

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0624	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.1	1.4e-39	33	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p GfrF+P+d+el+ +yL k+++k+l+ + ikev +yk++P +L + +++++ + ewyfF++rd+k+++gkr+nra+ +g+Wka +dk+v+ Gh_D04G0624 33 MPSGFRFKPRDDELI-FYLMCKARNKPLPP-TRIKEVPLYKYDPDTLTAisgNMSSNGTinEWYFFTSRDRKHPQGKRPNRAAGDGFWKAVNSDKHVK 128 699**********.9******999.67**********85456444433345*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +g+l+glkktLv+ +g+ +k++kt+W++hey l Gh_D04G0624 129 S-NGKLIGLKKTLVYCRGKPSKAQKTNWIVHEYVL 162 .99****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-44	30	187	IPR003441	NAC domain
PROSITE profile	PS51005	44.101	33	187	IPR003441	NAC domain
Pfam	PF02365	3.1E-20	34	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSINKSAAME EDGNQELMVR MKEAEDEAYL KSMPSGFRFK PRDDELIFYL MCKARNKPLP 60 PTRIKEVPLY KYDPDTLTAI SGNMSSNGTI NEWYFFTSRD RKHPQGKRPN RAAGDGFWKA 120 VNSDKHVKSN GKLIGLKKTL VYCRGKPSKA QKTNWIVHEY VLSDPPQTTH KNGHQLDGWA 180 LCRVYNRKPQ APKVPEKSSP QNFGSNNLNI ENQIKEQSAL QNFVTEDLNF SESDKFLLYA 240 NFGTIIYSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-43	32	193	19	174	NAC domain-containing protein 19
3swm_B	8e-43	32	193	19	174	NAC domain-containing protein 19
3swm_C	8e-43	32	193	19	174	NAC domain-containing protein 19
3swm_D	8e-43	32	193	19	174	NAC domain-containing protein 19
3swp_A	8e-43	32	193	19	174	NAC domain-containing protein 19
3swp_B	8e-43	32	193	19	174	NAC domain-containing protein 19
3swp_C	8e-43	32	193	19	174	NAC domain-containing protein 19
3swp_D	8e-43	32	193	19	174	NAC domain-containing protein 19
3ulx_A	7e-43	18	188	3	169	Stress-induced transcription factor NAC1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747821.1	0.0	PREDICTED: NAC domain-containing protein 68-like
Swissprot	K4BWV2	5e-46	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A1U8P9E7	0.0	A0A1U8P9E7_GOSHI; NAC domain-containing protein 68-like
STRING	Gorai.012G073400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24817	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-46	NAC domain containing protein 32

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]