PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0725

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 197aa MW: 22658.7 Da PI: 9.9003

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0725	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.6e-33	113	170	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+ Gh_D04G0725 113 EDGYRWRKYGQKAVKNSKFPRSYYRCTHQGCNVKKQVQRLSKDQSIVVTTYEGIHTHP 170 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-35	97	170	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-30	104	171	IPR003657	WRKY domain
PROSITE profile	PS50811	29.459	107	172	IPR003657	WRKY domain
SMART	SM00774	3.4E-40	112	171	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	113	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MENKYQMFFP ISSPASSAAY DPLTTNIMAP TSPHVFNNFH GNSSNGLMDL KTDQKFVKKA 60 AEVKEPVDQN GSFVGSEADY HLKSSAATDK KKEKMIRKPR YAFQTRSEVD ILEDGYRWRK 120 YGQKAVKNSK FPRSYYRCTH QGCNVKKQVQ RLSKDQSIVV TTYEGIHTHP IHNPTDNFEH 180 ILSQMHVYTP LFKPIHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	102	171	7	76	Probable WRKY transcription factor 4
2lex_A	1e-26	102	171	7	76	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23261	2e-47	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669846	0.0	KF669846.1 Gossypium hirsutum WRKY transcription factor 99 (WRKY99) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679426.1	1e-149	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A1U8IMT4	1e-147	A0A1U8IMT4_GOSHI; probable WRKY transcription factor 75
TrEMBL	A0A2P5S2H3	1e-147	A0A2P5S2H3_GOSBA; Uncharacterized protein
STRING	Gorai.012G085100.1	1e-147	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-53	WRKY DNA-binding protein 75