PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0771
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 22425.8 Da    PI: 9.8558
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0771genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.21.3e-151053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 r e+   rq  +skR+ gilKKA+EL +LC+++va++  s++g+
  Gh_D04G0771 10 RLEDLKARQAKYSKRKIGILKKAKELNILCEVDVALLFSSPSGR 53
                 5678889*********************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.432161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-20180IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-20160IPR002100Transcription factor, MADS-box
CDDcd002663.27E-18285No hitNo description
PRINTSPR004048.0E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-151156IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRKKLKIQR LEDLKARQAK YSKRKIGILK KAKELNILCE VDVALLFSSP SGRPTLFVGK  60
NSKGLSSILK RLSNLSFEER EERRAYTIEM LKKIYENSES EFDPLSLSYD TNADTLKLYK  120
DELQELKHIL VEKSKILRDW RNPNNVEDLN QIKMMEDHLI ASINGLRSRK NQLAMEQQIR  180
ERESEGNENL ET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458469.11e-125PREDICTED: MADS-box transcription factor 18-like
TrEMBLA0A0D2TLC11e-124A0A0D2TLC1_GOSRA; Uncharacterized protein
STRINGGorai.012G090100.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.12e-29AGAMOUS-like 94