PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0925

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 436aa MW: 48373.1 Da PI: 6.4093

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0925	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63.2	9.5e-20	41	96	3	58
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++h kv+gRdRR+R++++c +F L++e G+ ++++ti+WLlqq p Gh_D04G0925 41 KRRRYKGDRHIKVDGRDRRIRIPLTCCSGLFRLTREMGHRTNGETIQWLLQQTRPD 96 4566688*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.581	46	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.5E-17	46	95	IPR005333	Transcription factor, TCP
Gene3D	G3DSA:3.60.110.10	1.5E-56	121	399	IPR003010	Carbon-nitrogen hydrolase
SuperFamily	SSF56317	3.4E-54	121	403	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	6.25E-106	122	403	No hit	No description
PROSITE profile	PS50263	34.312	122	424	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	1.9E-44	123	396	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	155	170	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDSQTQSVDQ QQQEEENEQR PLLPENAEEE GGPTSLQPSK KRRRYKGDRH IKVDGRDRRI 60 RIPLTCCSGL FRLTREMGHR TNGETIQWLL QQTRPDLVPP DPVTHPTLLF ASAPAYMEKG 120 RVRATVVQAS TVFFDTPATL VDKAERLIAG SAAYGSQLVV FPEAFVGGYP RGFPFESPNE 180 DNQELPKYHA SAIEVPGPEV DRLAKISCRY KVHLVMGVVE KDGFYLFSTI LFFDPVGRYL 240 GKHRKLMRSA SECVVWCSGE KSSLPLYRTA IGKVGGLLYL DNRIPSLRTE LYAKGIQMYC 300 APTADAREEW RASMIHIAIE GRCFVLSANQ FCRRKDYSLP LKCIDGDSNS DLLDTIVCSG 360 GSVIVSPSGT ILAGPNYQGE SLISADLDLE EITRAKLEFG EVGLGMGPDS VGWSANKPNL 420 VLYQTAVKTE AFVDLS

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDSQTQSVDQ QQQEEENEQR PLLPENAEEE GGPTSLQPSK KRRRYKGDRH IKVDGRDRRI  60
RIPLTCCSGL FRLTREMGHR TNGETIQWLL QQTRPDLVPP DPVTHPTLLF ASAPAYMEKG  120
RVRATVVQAS TVFFDTPATL VDKAERLIAG SAAYGSQLVV FPEAFVGGYP RGFPFESPNE  180
DNQELPKYHA SAIEVPGPEV DRLAKISCRY KVHLVMGVVE KDGFYLFSTI LFFDPVGRYL  240
GKHRKLMRSA SECVVWCSGE KSSLPLYRTA IGKVGGLLYL DNRIPSLRTE LYAKGIQMYC  300
APTADAREEW RASMIHIAIE GRCFVLSANQ FCRRKDYSLP LKCIDGDSNS DLLDTIVCSG  360
GSVIVSPSGT ILAGPNYQGE SLISADLDLE EITRAKLEFG EVGLGMGPDS VGWSANKPNL  420
VLYQTAVKTE AFVDLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	8e-28	121	417	15	310	Nitrilase
3wuy_B	8e-28	121	417	15	310	Nitrilase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2522	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. {ECO:0000269\|PubMed:10574458}.

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738911.1	0.0	PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X1
Swissprot	Q42966	1e-126	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A1U8NIP3	0.0	A0A1U8NIP3_GOSHI; bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X1
STRING	Gorai.009G398700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20587	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-18	TCP family protein

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]