PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0988
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 654aa    MW: 72160.4 Da    PI: 8.788
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0988genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1223.5e-07303358156
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                  eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk   e   ke+
  Gh_D04G0988 303 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEY 358
                  799*****************************************994444444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-4300352No hitNo description
SMARTSM003383.0E-7303367IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-5307357No hitNo description
CDDcd147022.60E-13308359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTKSHVVFTH YICVSDANFC FFNSIHSHVL DPTHESLDRL RGIKIIRGTL RYILKAPQRL  60
VRDLFLLGRG LLSSSCASPT ADAAKDALAA DRMDMEAAEI LAALAHSKKR LAVSVSAEFG  120
AKWGCKGRRL RKRASTSTES LPSGVGSNPV QSGSDLAEQD QATIGQEQSQ VMSTSVVIES  180
VVAESLNGSH PSAERYPSDG VVRSSQNVTK AEKETCRLHR MLTRKESDWQ MIHERPILFS  240
TVGIPEKDIW EDSQLNEMTG NNALIKPVKT EQNAESVRSS PAGAIKHMSG GGGRSRQNLT  300
EAEKEARRLR RILANRESAR QTIRRRQALC EKLTLKVTDL TQENENLKRA KELALKEYHS  360
QDSTNKHLKA EMAKALKADE GKTTAELQLD HHISGPSGNY PYFFYNQHHF LPFCWPSSVQ  420
SSHPVQSQCG QNAIFVPSSI SSPANGRLDS SFNQENPINV NGPKTALYVV PYPWVFSLPD  480
QRSGLHPQPS CGTKDIEDET SVSNHFNAGC HLKPVMNEKY NSSLPVEVEK EANDPIEASP  540
NNKNCTSVRL PADGGVQCMS HIKEEVLVPG PLCSAGTTFE NRTDHVVKTE EAPIGAFHFV  600
GALPEENKES KSYTSKKVLD AVAAAEARKR RKELTKLKNL HGRHRSPLSL SAKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1627632RKRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613590.10.0PREDICTED: uncharacterized protein LOC108458699
TrEMBLA0A1U8NHE40.0A0A1U8NHE4_GOSHI; uncharacterized protein LOC107948464 isoform X1
STRINGGorai.009G405400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-42bZIP family protein