PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1055
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 237aa    MW: 27488.4 Da    PI: 5.9647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1055genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+  vk+lG+++W+ +a+  g++R++k+c++rw ++l
      Gh_D04G1055 17 KGPWHEEEDERLISFVKLLGSRRWDYVAQASGLKRSGKSCRLRWVNHL 64
                     79*******************************************996 PP
2Myb_DNA-binding50.93.5e-1674115548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++eE+ +++++++++G++ W+ Iar+++ gRt++++k++w+++l
      Gh_D04G1055  74 SAEEEMIILKLHQKWGNK-WSMIARMLP-GRTDNEIKNYWRTHL 115
                      89****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6591264IPR017930Myb domain
SuperFamilySSF466895.87E-2814111IPR009057Homeodomain-like
SMARTSM007172.6E-121666IPR001005SANT/Myb domain
PfamPF002492.2E-141764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211871IPR009057Homeodomain-like
CDDcd001671.00E-81964No hitNo description
PROSITE profilePS5129424.10665119IPR017930Myb domain
SMARTSM007173.4E-1569117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2372118IPR009057Homeodomain-like
PfamPF002496.7E-1474115IPR001005SANT/Myb domain
CDDcd001672.40E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MANETTTAAM QGENLRKGPW HEEEDERLIS FVKLLGSRRW DYVAQASGLK RSGKSCRLRW  60
VNHLRPNLKH SSISAEEEMI ILKLHQKWGN KWSMIARMLP GRTDNEIKNY WRTHLRKKAV  120
IQDQAGNFRF IQEDDNSSNS KTYNGESYNP FVDISDTQNS CYAAAPVSDF ETSPYETRLS  180
DWISEFLSDQ SEIKSQLDSN TTTTTTTTTP HSCNFYPAWF YEENDVWGYS GSLWNMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-29151192105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-281511956159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-281511956159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-29151192105C-Myb DNA-Binding Domain
1msf_C5e-29151192105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160101e-105JX616010.1 Gossypium hirsutum clone NBRI_GE60350 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443026.11e-178PREDICTED: myb-related protein 305 isoform X3
TrEMBLA0A0D2TZX61e-176A0A0D2TZX6_GOSRA; Uncharacterized protein
STRINGGorai.009G413600.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-63myb domain protein 27