PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1301
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 351aa    MW: 39758 Da    PI: 8.0512
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1301genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.9e-3268121255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtp+LH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  Gh_D04G1301  68 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMYRS 121
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.72964124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-3064122IPR009057Homeodomain-like
SuperFamilySSF466894.3E-1566122IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-2368123IPR006447Myb domain, plants
PfamPF002495.7E-1069120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MERNSSTECS KTAPSEQSDH QVEAEADSES EENDGESMPR NGGSSSNSTV EENDKKPSVR  60
PYVRSKMPRL RWTPDLHLRF VHAVERLGGQ DRATPKLVLQ MMNIKGLSIA HVKSHLQMYR  120
SKKIDDPRQV ISDHRHLVQS GDGNIFSLNQ LPMLQGYNHH HQGDSSNTFR YRDTSWNGRH  180
FSMRNPYTSR SFTDKQIPVL HGTVTDKIFG SNWTNYNFRM DTSSFNTLLA SWKCHEVLKN  240
EISSSSPNLQ SFLTKPSTQA KVEDETNCSR NSAQERRAMK RTISDSNLDL DLTLRLTQAK  300
EEKRPSSEED DVGLSLSLCG PPSSSKLSRL KGEDDSSREN GRRVSTLDLT I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1769123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1769123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1769123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1769123357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680825.10.0PREDICTED: putative two-component response regulator ARR13 isoform X1
TrEMBLA0A1U8IRY70.0A0A1U8IRY7_GOSHI; putative two-component response regulator ARR13 isoform X1
STRINGGorai.012G117800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-68G2-like family protein