PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1303
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 299aa    MW: 33667.6 Da    PI: 4.1092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1303genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS897.8e-281412753149
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  +a +++++ la+ +L  +se  +p g++++R+a+ + + ++++ +      y      ++s   s++   a+++f++++P+ +f+h++aN+
  Gh_D04G1303 141 HLLKAHGDATEKNQTDLAEVILRCVSEKGNPVGETLERIAFNLSQDIQNQNNY-----Y----LMQES---SKNFEVAFRTFYQIFPYGRFAHFAANS 226
                  778888899999*****************************876666665544.....2....22333...45677889******************* PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                  aIlea+ ++ e++HiiDfd++ G+QWp+L++a+a    +  +lR+T ++ 
  Gh_D04G1303 227 AILEAIPNDaEQLHIIDFDLGVGIQWPSLIEAIAGHW-QHKTLRLTSIKW 275
                  ******99889***********************975.5589****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.967113299IPR005202Transcription factor GRAS
PfamPF035142.7E-25141275IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMQSQDFTPS WPLVNSTIDQ LEPYGFNMGV HFDASSSFHT SVDSFFSNEN FPFSPYDFDD  60
DLLRVTVPWE DISAPLAGLD SMLTDGVEES FPLSSQRQDI WSPCPSIRSS EASTDTMLSP  120
LTMPILGEYA MEIDNQLPLF HLLKAHGDAT EKNQTDLAEV ILRCVSEKGN PVGETLERIA  180
FNLSQDIQNQ NNYYLMQESS KNFEVAFRTF YQIFPYGRFA HFAANSAILE AIPNDAEQLH  240
IIDFDLGVGI QWPSLIEAIA GHWQHKTLRL TSIKWGDDHS PGGFNTQECY FVTMLGPLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458654.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
RefseqXP_016679278.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5SFA20.0A0A2P5SFA2_GOSBA; Uncharacterized protein
STRINGGorai.012G118000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.19e-16GRAS family protein