PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1368

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 254aa MW: 28879.7 Da PI: 9.2331

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1368	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.8	3e-51	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp + e+e yfFs+r+ ky++ +r+nrat sgyWkatg dk+++++ ++ Gh_D04G1368 14 LPPGFRFHPTDEELVVQYLRRKVLACPLPA-SIIPEVDVCKADPWDLP--AGDLEQERYFFSTREAKYPNTNRSNRATISGYWKATGIDKQIVTSrSN 108 79**************************.89***********..34457899*****************************9998577 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+g+ap+g +tdW+mheyr+ Gh_D04G1368 109 QAVGMKKTLVFYRGKAPNGCRTDWIMHEYRV 139 78*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-57	10	174	IPR003441	NAC domain
PROSITE profile	PS51005	56.038	14	174	IPR003441	NAC domain
Pfam	PF02365	1.0E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLACP LPASIIPEVD VCKADPWDLP 60 AGDLEQERYF FSTREAKYPN TNRSNRATIS GYWKATGIDK QIVTSRSNQA VGMKKTLVFY 120 RGKAPNGCRT DWIMHEYRVV STETAACNAP PNKNQTQNNV VPMENWVLCR IFLKKRSAKN 180 DEEGLQSCNQ RIGKLRTSKP VFYDFLTKDR TDLNLAPSSS SSVSSGITQV SNNDADDHEE 240 SSCCNSFPYF RRKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	12	179	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	12	179	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	12	179	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	12	179	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	12	180	18	174	NAC domain-containing protein 19
3swm_B	2e-52	12	180	18	174	NAC domain-containing protein 19
3swm_C	2e-52	12	180	18	174	NAC domain-containing protein 19
3swm_D	2e-52	12	180	18	174	NAC domain-containing protein 19
3swp_A	2e-52	12	180	18	174	NAC domain-containing protein 19
3swp_B	2e-52	12	180	18	174	NAC domain-containing protein 19
3swp_C	2e-52	12	180	18	174	NAC domain-containing protein 19
3swp_D	2e-52	12	180	18	174	NAC domain-containing protein 19
4dul_A	2e-52	12	179	15	170	NAC domain-containing protein 19
4dul_B	2e-52	12	179	15	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4821	0.0	boll\| ovule\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847229	0.0	KC847229.1 Gossypium hirsutum NAC domain protein NAC52 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313796.1	0.0	NAC domain-containing protein 83
Refseq	XP_012459997.1	0.0	PREDICTED: NAC transcription factor 25
Swissprot	Q9FY93	3e-97	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1U8IPL4	0.0	A0A1U8IPL4_GOSHI; NAC domain-containing protein 83
STRING	Gorai.012G125500.1	1e-180	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-98	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]