PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1567
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22822.2 Da    PI: 10.4432
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1567genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.3e-201762146
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 k ienk  r vtfskRr gi KK +ELS+LC++e++ i+fs+tgk 
  Gh_D04G1567 17 KMIENKEDRLVTFSKRRLGIYKKISELSILCGTEILFIVFSPTGKP 62
                 68******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.84E-24980IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.927969IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-27968IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-171131IPR002100Transcription factor, MADS-box
PfamPF003196.1E-221965IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MASTGKKTRG RKKTQMKMIE NKEDRLVTFS KRRLGIYKKI SELSILCGTE ILFIVFSPTG  60
KPFSFGCPSV ESVSNHFLSK NRPINDNTNI LIEAYRMVRT NKLVQHYNEV HSQMDEIKRK  120
KRELVSAQQT SETNNTNHWW KTPIHQCNPR ELDELYSRFS ELAHMFHIAW CKKIANASLM  180
PTSTYFGNGH HRREF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hbx_A3e-14266367SERUM RESPONSE FACTOR
1hbx_B3e-14266367SERUM RESPONSE FACTOR
1hbx_D3e-14266367SERUM RESPONSE FACTOR
1hbx_E3e-14266367SERUM RESPONSE FACTOR
1k6o_B4e-14266266Serum response factor
1k6o_C4e-14266266Serum response factor
1srs_A3e-14266367PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B3e-14266367PROTEIN (SERUM RESPONSE FACTOR (SRF))
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670090.17e-70PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5RV121e-142A0A2P5RV12_GOSBA; Uncharacterized protein
STRINGGorai.012G147900.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.19e-29AGAMOUS-like 59