PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1568
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20954.3 Da    PI: 10.4195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1568genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.2e-181762146
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 k ienk  r vtfsk r gi KK +ELS+LC++e++ i+fs+tgk 
  Gh_D04G1568 17 KMIENKEDRLVTFSKCRLGIYKKISELSILCGTEILFIVFSPTGKP 62
                 68******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-25968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.184969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-221080IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-171131IPR002100Transcription factor, MADS-box
PfamPF003191.7E-201965IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASTGKKTRG RKKIQMKMIE NKEDRLVTFS KCRLGIYKKI SELSILCGTE ILFIVFSPTG  60
KPFSFGCPSI ESVSNHFLSR NRPINDNTNI LIEAYRMVRT NKLVQHYNEV HSQMDAIKRK  120
KKVLVSAQQT SETNNTNHWW KTPIHQCNPR ELNELYSRIS ELAHLCHIAW CKKIANASSM  180
SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hbx_A2e-14271372SERUM RESPONSE FACTOR
1hbx_B2e-14271372SERUM RESPONSE FACTOR
1hbx_D2e-14271372SERUM RESPONSE FACTOR
1hbx_E2e-14271372SERUM RESPONSE FACTOR
1k6o_B3e-14265265Serum response factor
1k6o_C3e-14265265Serum response factor
1srs_A2e-14271372PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B2e-14271372PROTEIN (SERUM RESPONSE FACTOR (SRF))
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483077.14e-72PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A0D2TPY51e-129A0A0D2TPY5_GOSRA; Uncharacterized protein
STRINGGorai.012G148000.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-32AGAMOUS-like 57