PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1601
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 126aa    MW: 14497.8 Da    PI: 10.034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1601genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-13497193
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                 ffkvlt+ d  ++  l+lp +++++   ++ ++++k+l+++d  g  W++++++ ++  +r  + +GW +Fv+ ++L++gD +v++ d+++ + ++
  Gh_D04G1601  4 FFKVLTKIDIERT--LSLPDSCLQALqqSQRSHGGKKLKVKDDVGILWNFRCTIrSGAVRRLHIVSGWIQFVRFKRLNTGDAIVLYKDDDTVTGPH 97
                 8999999998877..9******98888755566899****************77344445588999********************6665555455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.5572106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-14392IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-133104No hitNo description
SMARTSM010190.00464106IPR003340B3 DNA binding domain
PfamPF023623.1E-11492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MASFFKVLTK IDIERTLSLP DSCLQALQQS QRSHGGKKLK VKDDVGILWN FRCTIRSGAV  60
RRLHIVSGWI QFVRFKRLNT GDAIVLYKDD DTVTGPHYKI EVVKDHGDNY SSFVHKKEIY  120
ANVYII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.11e-64PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A0D2VTK88e-69A0A0D2VTK8_GOSRA; Uncharacterized protein
TrEMBLA0A2P5Q7101e-66A0A2P5Q710_GOSBA; Uncharacterized protein
STRINGGorai.012G151100.11e-69(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848