PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1605
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 124aa    MW: 13922.9 Da    PI: 8.4605
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1605genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.3e-13497193
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                 ffkvlt+ d  ++  l+lp +++++   ++ ++++ +l+++d  g sW++++  + +sg      + +GW +Fv+ ++L++gD++v++ d+++ + ++
  Gh_D04G1605  4 FFKVLTKIDIERT--LSLPDSCLQALqqSQRSHGGEKLQVKDDVGISWNFYC--TIRSGVvpkLDIVSGWIQFVRVKRLNTGDVIVLYKDDDTVTGPH 97
                 8999999998877..9******98888755556888****************..7777666667888*********************6665555455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-12392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-13392IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-133104No hitNo description
PfamPF023628.1E-11492IPR003340B3 DNA binding domain
SMARTSM010190.00734106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MASFFKVLTK IDIERTLSLP DSCLQALQQS QRSHGGEKLQ VKDDVGISWN FYCTIRSGVV  60
PKLDIVSGWI QFVRVKRLNT GDVIVLYKDD DTVTGPHYKI EVVKGHGDNY SSSAQMYTKS  120
CYAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.12e-64PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A2P5Q7109e-78A0A2P5Q710_GOSBA; Uncharacterized protein
STRINGGorai.012G151200.14e-75(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848