PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1646
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 90aa    MW: 9896.05 Da    PI: 10.2159
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1646genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091458344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +q+ ++   +W  +a+ +g ++t++++k ++
      Gh_D04G1646 14 TWTPKQNKLFEKALAQFDKDtpdRWQNVAKAVGGNKTAEEVKRHY 58
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.562762IPR017877Myb-like domain
SMARTSM007178.0E-81164IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-121369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-41368IPR009057Homeodomain-like
PfamPF002492.0E-71458IPR001005SANT/Myb domain
CDDcd001671.09E-51458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSLRSRD SGPTWTPKQN KLFEKALAQF DKDTPDRWQN VAKAVGGNKT AEEVKRHYEI  60
LIQDLEHIES GRIPIPKYKS SGGGGGNGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30883478RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153531e-126JX615353.1 Gossypium hirsutum clone NBRI_GE59294 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679320.18e-62PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8IMD72e-60A0A1U8IMD7_GOSHI; protein RADIALIS-like 3
STRINGGorai.012G155400.11e-53(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-34RAD-like 6