PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1686

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 416aa MW: 47470 Da PI: 6.9639

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1686	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.7	2.4e-21	87	181	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+ +sp+qC++k++nlnk y+++++ +++ +++++++ +++d Gh_D04G1686 87 KWTGKMVKLLITILSYIGEDPSTDCagnqikvssllRKLGKWKCVSKVMLERGYIVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKLLD 181 7********************988899999999999*****************************************95588887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-18	85	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEGKPSAGGN MLQEWEYGCL GLQGSIQPQN EQQPCMSKLP SAFGSVENER REITVIEDDV 60 TNYAKQCMLE HNEAGKNEDG PPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS 120 LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL 180 DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRMYLPH DPDLLQSLLF ILKNEDDYEL 240 LDSNQPTPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SCSNQTLNAQ GDATEYNGAN 300 SGFSAEISTL WFKPMNDNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RQAYQLEKRK 360 LRLKSKVFDL EKQRLKWRRR SWKQDMELEK MRLVNKCLKH GNEYIALQLK GKKIGS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEGKPSAGGN MLQEWEYGCL GLQGSIQPQN EQQPCMSKLP SAFGSVENER REITVIEDDV  60
TNYAKQCMLE HNEAGKNEDG PPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS  120
LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRMYLPH DPDLLQSLLF ILKNEDDYEL  240
LDSNQPTPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SCSNQTLNAQ GDATEYNGAN  300
SGFSAEISTL WFKPMNDNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RQAYQLEKRK  360
LRLKSKVFDL EKQRLKWRRR SWKQDMELEK MRLVNKCLKH GNEYIALQLK GKKIGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679503.1	0.0	PREDICTED: uncharacterized protein LOC107898530
TrEMBL	A0A1U8ISV1	0.0	A0A1U8ISV1_GOSHI; uncharacterized protein LOC107898530
STRING	Gorai.012G159500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22149	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-82	sequence-specific DNA binding transcription factors