PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1732

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 487aa MW: 50996.8 Da PI: 8.0412

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1732	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.3	2.3e-41	125	230	2	113
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ +sk Gh_D04G1732 125 PPAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAP-------PSK 215 5789*****************************************************************9998888888888854444.......333 PP TCP 99 ksqksaasalnlake 113 ++++s + al+la + Gh_D04G1732 216 SAPHSFHGALALASH 230 333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.0E-39	130	251	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	131	185	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEPTYSQNNK QTNNNTNLVS FDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS 60 STATVITTAT PPLSSSSSSS SSTTKTNPAQ PVDASLAIAT RSSASLNIDD STKKNQPNLP 120 PSSNPPAKRS TKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP 180 AIIAATGTGT IPANFSTLNV SLRSSGSTLS APPSKSAPHS FHGALALASH HHPYEEGFAH 240 SALFGFHHQQ QQLLRAGQIA ETLPAGGSGS GGGGNSSENY MRKRFREDLF KDDNQQQGET 300 GDGGGSGDGD SGGDGSSIKA FKTGLPQLHK PSNILPATAM WAVAPAPSST TGSTFWMLPV 360 ATTGPSILTA ASGAGSSEPQ IWPFGTASGN TLQAPLHFVP RINLQGDLES QGGRASPLQL 420 GSMLLQQQHQ PSQHLGLGLS ESNLGMLAAL NAYSRGGPNI NSDQNNPMEH HQQQGTNSGD 480 ENPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEPTYSQNNK QTNNNTNLVS FDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS  60
STATVITTAT PPLSSSSSSS SSTTKTNPAQ PVDASLAIAT RSSASLNIDD STKKNQPNLP  120
PSSNPPAKRS TKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP  180
AIIAATGTGT IPANFSTLNV SLRSSGSTLS APPSKSAPHS FHGALALASH HHPYEEGFAH  240
SALFGFHHQQ QQLLRAGQIA ETLPAGGSGS GGGGNSSENY MRKRFREDLF KDDNQQQGET  300
GDGGGSGDGD SGGDGSSIKA FKTGLPQLHK PSNILPATAM WAVAPAPSST TGSTFWMLPV  360
ATTGPSILTA ASGAGSSEPQ IWPFGTASGN TLQAPLHFVP RINLQGDLES QGGRASPLQL  420
GSMLLQQQHQ PSQHLGLGLS ESNLGMLAAL NAYSRGGPNI NSDQNNPMEH HQQQGTNSGD  480
ENPNNSQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8969	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679705.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	6e-88	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U8INK2	0.0	A0A1U8INK2_GOSHI; transcription factor TCP8-like
STRING	Gorai.012G166500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-79	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]