PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1738

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 295aa MW: 33602.2 Da PI: 8.8513

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1738	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.1	1.1e-11	8	109	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+k lt+ d +k+ l++p k ++ +g +++++++d +g+ W + ++ r++++ vl+kGW +Fv+ +L +gD+v+ + ++ + Gh_D04G1738 8 FIKRLTKTDIGKR--LSVPSKKK-RCflnfDGR--HQVDVKVKDDNGKDWLFGCSKRRGRDNypkPVLSKGWLQFVRCWKLAVGDTVIVNWVmEKdGK 100 6777777777765..89998875.444755444..6799*************776665557889*********************954333488 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++++ v+r Gh_D04G1738 101 GNYRINVIR 109 888888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.8E-15	4	94	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.361	6	111	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-11	6	100	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-8	8	110	IPR003340	B3 DNA binding domain
CDD	cd10017	6.01E-17	8	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAIEKLQFIK RLTKTDIGKR LSVPSKKKRC FLNFDGRHQV DVKVKDDNGK DWLFGCSKRR 60 GRDNYPKPVL SKGWLQFVRC WKLAVGDTVI VNWVMEKDGK GNYRINVIRA GVLPLVQNRD 120 ADRAIASNSS TERTITYDRT EGLRNLPKFI DFLESDSQQR EMEHPSNPAL HNINVDEVLI 180 TSSAAPYSKL HGADRVMAVA AYTDVEQEAT ITFAGTELTV SYDQTEGLHN QPGFMFEFIS 240 QKPDETDRKS RAIDCSDLGS QEQREMEHPS ILALHSINMV KMPVTSSRTP YIKFF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243083	0.0	AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5PXC7	0.0	A0A2P5PXC7_GOSBA; Uncharacterized protein
STRING	Gorai.012G167400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17835	4	7