PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1739
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 145aa    MW: 16828.4 Da    PI: 9.6574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1739genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.67.9e-12892185
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                 f+k lt+ dv k+  l++p +   ++     g k     + +++d++g++W+++++ rkk+    vlt+GW  Fv+  +L +gD v  + +
  Gh_D04G1739  8 FKKRLTKTDVEKR--LSIPSRNK-KCflnflG-K--HMAEFKVKDKHGKEWKFNCSTRKKDYPkPVLTSGWLLFVQWWNLAVGDEVKVYGK 92
                 7888988888876..9***9975.55688643.3..23489**************7655544369*******************9888744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-16390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-13788IPR015300DNA-binding pseudobarrel domain
CDDcd100178.68E-14790No hitNo description
PfamPF023627.2E-9891IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAIEKELFKK RLTKTDVEKR LSIPSRNKKC FLNFLGKHMA EFKVKDKHGK EWKFNCSTRK  60
KDYPKPVLTS GWLLFVQWWN LAVGDEVKVY GKMDQAGEEH YRIEVAVATD STADGTVNDD  120
QTETHFFEFI SLKPDLNVGK SKLIN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430831e-176AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612803.13e-39PREDICTED: uncharacterized protein LOC108458073
RefseqXP_017612804.13e-39PREDICTED: uncharacterized protein LOC108458073
TrEMBLA0A0D2VZ851e-101A0A0D2VZ85_GOSRA; Uncharacterized protein
STRINGGorai.012G167500.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.15e-07auxin response factor 4