PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1753
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 276aa    MW: 29732.9 Da    PI: 5.6252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1753genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.3e-11998190
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                 f k+l++ d +  +rl +p k + +     g     +  ++++ + g + W +++++rk++ +  vl+ GW++Fv +n+Lk+gD+++ + d + +++
  Gh_D04G1753  9 FSKKLKTTDIN--KRLAIPEKILPSLpafnG-----GHAVMIQLKYGtNIWPIYCTVRKNGYKkPVLSVGWRKFVADNKLKTGDIITMYKDFEdEDG 98
                 66777555554..468999999988865432.....2345555555559******996555555***********************9965333554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-153115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-124104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9537110IPR003340B3 DNA binding domain
CDDcd100173.64E-177108No hitNo description
SMARTSM010199.0E-69105IPR003340B3 DNA binding domain
PfamPF023629.4E-91198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASQPTKMFS KKLKTTDINK RLAIPEKILP SLPAFNGGHA VMIQLKYGTN IWPIYCTVRK  60
NGYKKPVLSV GWRKFVADNK LKTGDIITMY KDFEDEDGGS HFRVEVEKPP AASKQDRSHG  120
TLPSSSVLAF NDHEVDGTNS GNEADRIPNK ALDDGAINLE GGIPIMELPD VATDTLVDGH  180
VIAKPSVTIF GAIMTDEMKC LGITKGTDMA EPSLLSPCMA KPEREIDFLG IAEGGDAIAY  240
GSGPSDAAGE ACCNFITHHR SVTLDLVLSQ PNPYAG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163490.0JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.10.0PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A2P5QKZ60.0A0A2P5QKZ6_GOSBA; Uncharacterized protein
STRINGGorai.012G168700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2078936