PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1754
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 251aa    MW: 28133.2 Da    PI: 7.0698
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1754genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.3e-13996189
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89
                 ffk+lt  dv k  rlv+pk++ + +    g   + + +++l+  +g+ Wevk+++rkk+    vl+ GWk+Fv  n+Lk+gD ++ + d++  
  Gh_D04G1754  9 FFKELTDTDVKK--RLVVPKEYQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVRKKGYLkPVLSVGWKKFVVVNELKVGDRITMYKDEDGF 96
                 899997777776..59*****9876697543...4677899887.9********77544433699*********************99444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.9977107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-167101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-168101IPR015300DNA-binding pseudobarrel domain
CDDcd100179.55E-228105No hitNo description
SMARTSM010198.6E-99104IPR003340B3 DNA binding domain
PfamPF023626.4E-10995IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRK  60
KGYLKPVLSV GWKKFVVVNE LKVGDRITMY KDEDGFSHYM VEVEKPPASN QHGTLPDSPA  120
LSFIHHKPDE TTLKYRKEVP EDLAGAHHQP DIAPMNIPVN AWQWPSIGMF GTNMSNERAD  180
HFSLMTYGSG TSAAGGIGEA CPEIITDHHQ DLSLDLVRRQ PGTIPPPYVG EVKLDLTLAP  240
TQCGESQRIT N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679336.10.0PREDICTED: uncharacterized protein LOC107898334
TrEMBLA0A1U8IMJ30.0A0A1U8IMJ3_GOSHI; uncharacterized protein LOC107898334
STRINGGorai.012G168900.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1975325