PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1757

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 115aa MW: 13041.1 Da PI: 9.5523

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1757	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.8	5e-37	8	101	1	95
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+ +yL kk++++ +++ ++i++vdiy+++PwdLp k+ +ekewyfF++rd+ky++g r+nrat+ g+Wkatg+ k ++++ Gh_D04G1757 8 VPPGFRFHPTDEELILHYLMKKLSSSAFPV-SFIADVDIYQFDPWDLPDKAVLGEKEWYFFCPRDRKYPNGARPNRATRLGFWKATGTVKIIVAS 101 69**************************.89***********7777899*******************************9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-41	5	106	IPR003441	NAC domain
PROSITE profile	PS51005	38.555	8	115	IPR003441	NAC domain
Pfam	PF02365	2.4E-17	9	96	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MRHPHSTVPP GFRFHPTDEE LILHYLMKKL SSSAFPVSFI ADVDIYQFDP WDLPDKAVLG 60 EKEWYFFCPR DRKYPNGARP NRATRLGFWK ATGTVKIIVA SSMAAGRGGC ISILV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	7	106	16	115	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	7	106	16	115	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	7	106	16	115	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	7	106	16	115	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	7	106	19	118	NAC domain-containing protein 19
3swm_B	1e-42	7	106	19	118	NAC domain-containing protein 19
3swm_C	1e-42	7	106	19	118	NAC domain-containing protein 19
3swm_D	1e-42	7	106	19	118	NAC domain-containing protein 19
3swp_A	1e-42	7	106	19	118	NAC domain-containing protein 19
3swp_B	1e-42	7	106	19	118	NAC domain-containing protein 19
3swp_C	1e-42	7	106	19	118	NAC domain-containing protein 19
3swp_D	1e-42	7	106	19	118	NAC domain-containing protein 19
4dul_A	1e-42	7	106	16	115	NAC domain-containing protein 19
4dul_B	1e-42	7	106	16	115	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458348.1	2e-80	PREDICTED: NAC transcription factor NAM-B1-like
Swissprot	Q84TD6	2e-50	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2P5QKW5	8e-81	A0A2P5QKW5_GOSBA; Uncharacterized protein
STRING	Gorai.012G169300.1	7e-66	(Gossypium raimondii)
STRING	Gorai.013G191800.1	9e-66	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	6e-53	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]