PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1827

Common Name

SPL11

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 476aa MW: 52597.9 Da PI: 7.8316

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1827	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.4e-41	188	265	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+a++yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfh+lsefD +krsCrrrL++hn+rrrk+q+ Gh_D04G1827 188 RCQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRRRLSDHNARRRKPQT 265 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.5E-32	183	250	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.419	186	263	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.44E-39	187	268	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-31	189	262	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MSFISLMEWN EQTPLQWDWE NLMLNATPTE IPRRLRPVEW GIDEGEGGLD SVSLNSSSVA 60 GGSGGSGSDL GLASLSKNLK SASIDSLSMG EAKLTKFTLD AYEAIPDDIS NKKEVSGIET 120 TSTSLTLVAS VGSGEPLLSL KLGKQTFSED FSTGTNATDS SYSATLSTSS PLSAKRSKLN 180 CRSTHVVRCQ VEGCNLDLSS ARDYHRKHKV CESHSKSPKV IVSGLERRFC QQCSRFHALS 240 EFDVNKRSCR RRLSDHNARR RKPQTEATHF NAARISSSYD GKQHTSFVWN EVPILHNVRP 300 KKKFAMEGTF YSKSSRMTSY MPMKLGNINE QVQLPINQLS NPVMMRCNDF NKFLPSKGKQ 360 NTAEVLDGGV EQSMVASSTG TAQELHRALS LLSNDPQVSS EPKHGSLTYP IMHVDPTSTS 420 QPAMNAIPQG FQHALPENWQ IGQQEETSTE SRMHTSDVDN RFREFLLLKA PYDGGF

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MSFISLMEWN EQTPLQWDWE NLMLNATPTE IPRRLRPVEW GIDEGEGGLD SVSLNSSSVA  60
GGSGGSGSDL GLASLSKNLK SASIDSLSMG EAKLTKFTLD AYEAIPDDIS NKKEVSGIET  120
TSTSLTLVAS VGSGEPLLSL KLGKQTFSED FSTGTNATDS SYSATLSTSS PLSAKRSKLN  180
CRSTHVVRCQ VEGCNLDLSS ARDYHRKHKV CESHSKSPKV IVSGLERRFC QQCSRFHALS  240
EFDVNKRSCR RRLSDHNARR RKPQTEATHF NAARISSSYD GKQHTSFVWN EVPILHNVRP  300
KKKFAMEGTF YSKSSRMTSY MPMKLGNINE QVQLPINQLS NPVMMRCNDF NKFLPSKGKQ  360
NTAEVLDGGV EQSMVASSTG TAQELHRALS LLSNDPQVSS EPKHGSLTYP IMHVDPTSTS  420
QPAMNAIPQG FQHALPENWQ IGQQEETSTE SRMHTSDVDN RFREFLLLKA PYDGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-27	189	262	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3540	0.0	boll\| leaf\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622319	0.0	KJ622319.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679604.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016679605.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016679606.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016679607.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016679608.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
TrEMBL	A0A1U8IT55	0.0	A0A1U8IT55_GOSHI; squamosa promoter-binding-like protein 2
STRING	Gorai.012G176500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6562	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	7e-66	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Zhang X, et al. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Mol. Genet. Genomics, 2015. 290(1): p. 115-26 [PMID:25159110]