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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D04G1866 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 282aa MW: 31637.3 Da PI: 10.1969 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D04G1866 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 334.4 | 3e-102 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mddd+ + rn+gyyep+ +k +lglqlmss+ erdak r+ nl +++++ ++++rd m++ rd+++a+ ++kl+++
Gh_D04G1866 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMVERDAKSfipgRDPNL-MITTNTTFHQRDpvvseahipMNY-VRDSWIAD--------REKLFNMF 86
9***9999*******99..*******************99********.************************.9*******........7899***9 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
++++ +++ vl++t+ ++sl l++++ +r+e+ a +e + + +k++ ++kkrq +++pk +kakk+kk +k++ +++
Gh_D04G1866 87 PATT-------PNYAVLPETSAAHSLSI-----LQPPPDSsTRDER--VASSVE-ELPANKDSVEPKKRQGGAVPKMPKAKKPKK----PKENANSAV 165
9665.......57899********9998.....7777766334433..333444.566777777888899*************99....333444444 PP
GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
+r k kksi + +ng ++D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLa e y++s
Gh_D04G1866 166 --QRLKPAKKSIIFKINGYEMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAVENYNFS 261
..689********************************************************************************************* PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
np+DL++hWA+HGtnkfvtir
Gh_D04G1866 262 NPIDLRSHWARHGTNKFVTIR 282
********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM VERDAKSFIP GRDPNLMITT NTTFHQRDPV 60
VSEAHIPMNY VRDSWIADRE KLFNMFPATT PNYAVLPETS AAHSLSILQP PPDSSTRDER 120
VASSVEELPA NKDSVEPKKR QGGAVPKMPK AKKPKKPKEN ANSAVQRLKP AKKSIIFKIN 180
GYEMDISGIP IPVCSCTGTA QQCYRWGFGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAVENYNF SNPIDLRSHW ARHGTNKFVT IR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
