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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D04G1867 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 268aa MW: 29976.3 Da PI: 10.4434 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D04G1867 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 303 | 1.1e-92 | 1 | 268 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasa 94
mdd++ + rn+gyyep+ +k +lglqlmss+ erdak r++nl + +++ af+q+d ++e + + + +v+++
Gh_D04G1867 1 MDDNALNMRNWGYYEPS--FKGHLGLQLMSSMVERDAKSfipsRDSNL-MVTTN-------TAFHQQDPVVSE----------AHIPMNYVRDT---- 74
99999988*******99..******************98777777777.55555.......556667777788..........34444554443.... PP
GAGA_bind 95 lpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaek 191
+ +++ v ++t+ + sl l+ ++ +r+e+ a + e+++ +k+ ++kkrq ++ pk +kakk+kk +k++ ++ +r+k+ k
Gh_D04G1867 75 TTPNYAVHPETSAAYSLPI-----LRSPPNSsTRDERV--ASSV-EEPPANKDGVEPKKRQGGAAPKMPKAKKPKK----PKENANST--LQRVKSAK 158
4567889999999998888.....55555552444443..3333.4567777777888899999*******99999....22333333..3789**** PP
GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhW 289
ksi + +n +D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y++snp+DL++hW
Gh_D04G1867 159 KSIVFKINRYFMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDLRSHW 256
************************************************************************************************** PP
GAGA_bind 290 AkHGtnkfvtir 301
A+HGtnkfvtir
Gh_D04G1867 257 ARHGTNKFVTIR 268
***********8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MDDNALNMRN WGYYEPSFKG HLGLQLMSSM VERDAKSFIP SRDSNLMVTT NTAFHQQDPV 60
VSEAHIPMNY VRDTTTPNYA VHPETSAAYS LPILRSPPNS STRDERVASS VEEPPANKDG 120
VEPKKRQGGA APKMPKAKKP KKPKENANST LQRVKSAKKS IVFKINRYFM DISGIPIPVC 180
SCTGTAQQCY RWGFGGWQSA CCTTNVSMYP LPMSTKRRGA RIAGRKMSQG AFKKVLEKLA 240
AENYNFSNPI DLRSHWARHG TNKFVTIR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
