PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1891
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23906.3 Da    PI: 8.9006
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1891genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Gh_D04G1891  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                 79***********************************************96 PP
2K-box851.6e-287013436100
        K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  Rh++GedL+sLslkeLq+LeqqL++++k+iRskKn+l+ e+i+elq+kek++qe+n +L k+++e
  Gh_D04G1891  70 RHYMGEDLDSLSLKELQNLEQQLDTAIKHIRSKKNQLISESISELQRKEKAIQEQNAMLAKQIKE 134
                  9*************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.352161IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.39E-37261No hitNo description
SuperFamilySSF554552.22E-29267IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.70948138IPR002487Transcription factor, K-box
PfamPF014864.5E-2370132IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SWVLFAIFCR HYMGEDLDSL SLKELQNLEQ QLDTAIKHIR SKKNQLISES ISELQRKEKA  120
IQEQNAMLAK QIKEREKTVA QAQQSQWGQH QQQLGLNTST SFLLPQPPHP CLNIGGTYQE  180
EATDQVRRNE LDLTLEPIYT CHLGYFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19160161MEF2C
5f28_B2e-19160161MEF2C
5f28_C2e-19160161MEF2C
5f28_D2e-19160161MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556370.0KC155637.1 Gossypium hirsutum MADS box protein MADS42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313787.11e-138truncated transcription factor CAULIFLOWER A-like
RefseqXP_016679746.11e-138PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_016679747.11e-138PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S72e-98AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLU5L2F41e-136U5L2F4_GOSHI; MADS box protein MADS42
STRINGGorai.012G185500.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]