PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1925

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 341aa MW: 37532 Da PI: 5.8893

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1925	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.8e-10	153	200	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r + NR +A+rs ++K ++ eLe+kv++L++e ++L l Gh_D04G1925 153 KRAKRIIANRRSATRSKEKKALYMSELERKVQTLQTEATTLCAHLTLF 200 9**************************************998777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-12	149	213	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.783	151	214	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-8	153	218	No hit	No description
Pfam	PF00170	2.8E-8	153	198	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-9	153	207	No hit	No description
CDD	cd14703	1.80E-20	154	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MQDPRNLNPN PDPAFPSFTQ NMPSFSNPAQ YRGSYHRRAQ SEVQFRIPDD LDLVSDPFEG 60 VGSEDDMLCS YMDIEMPGES AKGVEAAAGS WSQNPKGEEV SGGSGIGEKY NGGGKGRHRY 120 SNSVDGCSIM ESIEAKKAMA PDKLAELWTI DPKRAKRIIA NRRSATRSKE KKALYMSELE 180 RKVQTLQTEA TTLCAHLTLF QRDTTGLTTE NAELKLRLQA MEQQAQLSDA LNEALKKEVE 240 RLKTATGEIT TPTDTFNLGM HHISYAQSSF FPPQNTQLPP FHPFHSNLLT SSLNTNSHVL 300 ADMMQQDPLG LLQGLDTSSR GSPFVKSESP SICAAERSGT V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9745	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719003.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-105	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8M022	0.0	A0A1U8M022_GOSHI; transcription factor RF2b-like
STRING	Gorai.012G014500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-97	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]