PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1974
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 201aa    MW: 22853.5 Da    PI: 6.1594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1974genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.74.2e-14456149
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk 49
                 ++pGfrF Pt+eelv++yL++k+e ++      +++vi+ v+iy+++PwdLp+
  Gh_D04G1974  4 MAPGFRFYPTEEELVSFYLHHKLEMERedlnRLMDRVIPIVNIYEFNPWDLPR 56
                 579********************99995653223347**************93 PP
2NAM28.15.9e-095782102127
          NAM 102 lkktLvfykgrapkgektdWvmheyr 127
                  +k+t+vfy+grap+g +t+W m+ey+
  Gh_D04G1974  57 VKRTMVFYNGRAPNGIRTEWKMNEYK 82 
                  79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-253109IPR003441NAC domain
PROSITE profilePS5100513.4214185IPR003441NAC domain
PfamPF023651.3E-9682IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEDMAPGFRF YPTEEELVSF YLHHKLEMER EDLNRLMDRV IPIVNIYEFN PWDLPRVKRT  60
MVFYNGRAPN GIRTEWKMNE YKAIEQGASS ISATPTLRHE FSLCRVYKKS KCLRSFDRRP  120
PAGGVQIIKP NAAAHQGEAT AGEAASGYHK SHQMAGSPES SSSEDHGNPS QTGASNDSSA  180
TVFNYDELFW NLDGFWESQI P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441618.11e-134PREDICTED: NAC domain-containing protein 90-like isoform X2
TrEMBLA0A1U8NNI51e-132A0A1U8NNI5_GOSHI; NAC domain-containing protein 90-like isoform X2
STRINGGorai.009G399900.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.26e-23NAC domain containing protein 61