PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0182
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 296aa    MW: 34870.4 Da    PI: 9.6925
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0182genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.2e-104392156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 s+ykGV + k +g+W A+++       + +r++ g+f ++ +Aa a++ a+ k++ e
  Gh_D05G0182 43 SQYKGVMRQK-NGQWGAQLYA------NhTRIWQGTFKSEIDAAMAYDSAAIKFRTE 92
                 78****8676.8******887......34**********99************9875 PP
2B381.11.1e-25162258183
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+ltpsdv+k++rlv+pkk+a ++              g  k+++++l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++D+v F 
  Gh_D05G0182 162 FQKELTPSDVGKLNRLVIPKKYAVKYfspvfgtenenadvGDRKTNDVELVFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKAKDVVSFF 258
                  99***********************************99988999*************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1443101IPR016177DNA-binding domain
CDDcd000183.90E-2043101No hitNo description
PROSITE profilePS5103216.8054499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-164499IPR001471AP2/ERF domain
SMARTSM003802.3E-1744105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-29158278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-25161278IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-21161257No hitNo description
PfamPF023621.7E-22162258IPR003340B3 DNA binding domain
PROSITE profilePS5086311.434162277IPR003340B3 DNA binding domain
SMARTSM010197.5E-17162267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEEEITSVIL SGEANTHSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL  60
YANHTRIWQG TFKSEIDAAM AYDSAAIKFR TEDTHRNFPW NEITIEEPKF LSHYSVETVL  120
SMIRDGSYQY KFMDFIKAHS RNTKLNLVGT YSNEGLICKQ LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFSP VFGTENENAD VGDRKTNDVE LVFYDKFMRI WKFRYCYWNS SQSFVFTRGW  240
NRFLKEKELK AKDVVSFFVC ECRKENDVQR FWYRCQQIRE RWHVRGGKQR SCWNRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2715825710100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147521e-54JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684469.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6883e-90RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1U8J8F40.0A0A1U8J8F4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.009G020300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-92RAV family protein