PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0228
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 205aa    MW: 24297.1 Da    PI: 9.752
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0228genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34121042103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+ ++++i+w + +nsf+v+d+  f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF++++F +gk +ll++i 
   Gh_D05G0228  12 FVVKTYQMVNDPMTNTVITWGKANNSFIVIDHLVFTQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFANEWFLRGKMHLLKNIV 99 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_D05G0228 100 RRKHN 104
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-488101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-329101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-359101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEGNSTNIVA PFVVKTYQMV NDPMTNTVIT WGKANNSFIV IDHLVFTQRI LPVYFKHSNF  60
SSFVRQLNTY GFKKVDPDKW EFANEWFLRG KMHLLKNIVR RKHNKNLNRQ VKAEGLNEEE  120
EEEEEDIVME IAKLKEEQKS LEEEIKGMNK RLEATERRPQ QMMAFLYKVV EDPDLLPRML  180
LEKEHKKQLN PNKKRRLMTV MPSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22910126129Heat shock factor protein 1
5d5v_B2e-22910126129Heat shock factor protein 1
5d5v_D2e-22910126129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674080.0KR067408.1 Gossypium hirsutum HSF27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447623.11e-148PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV525e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0D2UF111e-147A0A0D2UF11_GOSRA; Uncharacterized protein
STRINGGorai.009G024700.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-79heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]