PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0306

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 996aa MW: 107441 Da PI: 8.1438

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0306	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.9e-06	479	499	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ Gh_D05G0306 479 YCRHYLK-GRCHEGEKCKFSHD 499 5****.***********7 PP
2	zf-CCCH	20	1.2e-06	533	553	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ++ G C++Gd C F+H Gh_D05G0306 533 PCINYTTKGSCSRGDDCLFSH 553 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	474	501	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.11E-6	475	499	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0089	475	500	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-4	503	529	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.338	503	530	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.34	531	555	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	532	560	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.718	533	556	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-4	533	554	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MEEPQEAGVG DPFSFPPHRR SHLRSVTYRN LVRLMSLCYG DSPLATAPPI IPLPQTPDNG 60 GNRGEQGGDD VREPGESIVS DSREPVNMVA NGGSEGAVFR DKGLNDTQMV IDEIEQIMGM 120 DDGQDLFDQN DMMVNSSMEG NSFQDGEIGR EQMLMADLEN IMKGNEDCHQ ISNCSAATLG 180 QNQGDNCPGI LLNNQDEHND CPPVVMESGT VGQTQVDMEG GNQKNIDPFG ISSNKSLAIE 240 VSKLSGKVKD QSSSLKTNLM HEKNEIQQKE MELENIIPSN EGTCSPGPVV EKGELEEGEI 300 FGESLLVNES IDILLDDAVV SEKKVDGAVV SGKKVEETLI SGGTFDDKHP YCNEESTVND 360 GTSEFTFVNT TVAPIENKVT PGEFKGSETG QMVYELGMMQ RKECSGKIQK QIGHKNTVIE 420 TKLKKDVGLS NKKKQILNPA QKKEKKKKNK RKKRAEKNRQ LGVKRLKLQT VLKPKTVTYC 480 RHYLKGRCHE GEKCKFSHDT VPLTKSQPCS HFARQSCMKG DDCPFDHQLS KYPCINYTTK 540 GSCSRGDDCL FSHKKPLEGD VASLTVAPDL PLKSSLQSDS DVGLNISRAP PKNANALSYS 600 LGGFSDKSKK QIVADTPSKT PNLACKGVNS LFVSKSSIAE SIQLNQGSSS QKMNESGRVG 660 SQSNQRMLGV RGPASKPSVA ESSKFILGSS SLKMNGSGRL GIQGHQSESH KIQNGNDSPK 720 KKPEMVPRGI NFLSFGKSSL EDSTRKVSLA NGADGYKQQP SDIEGGGGKF SSQLTPSTSS 780 TDKKKSHPAV VPPGINLTLG KLVSSGSSTS SSLPNCSDNV NNGSLPKINY IAGEQRNSSA 840 MSYKLPVSPQ TSGQSSEWLA HKSTPNAREA LISTLAVAKK FDDVKGKSVH GSQQLSDKQF 900 NSNANPWKMP ASLLTTGQSS EKITPKSTPN SSQKALMSTL AFATMFEFGM KKNQSAIRTA 960 VNSETGDSRT GEGTKTDTAK TSKLLDILSS VGSKIK

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MEEPQEAGVG DPFSFPPHRR SHLRSVTYRN LVRLMSLCYG DSPLATAPPI IPLPQTPDNG  60
GNRGEQGGDD VREPGESIVS DSREPVNMVA NGGSEGAVFR DKGLNDTQMV IDEIEQIMGM  120
DDGQDLFDQN DMMVNSSMEG NSFQDGEIGR EQMLMADLEN IMKGNEDCHQ ISNCSAATLG  180
QNQGDNCPGI LLNNQDEHND CPPVVMESGT VGQTQVDMEG GNQKNIDPFG ISSNKSLAIE  240
VSKLSGKVKD QSSSLKTNLM HEKNEIQQKE MELENIIPSN EGTCSPGPVV EKGELEEGEI  300
FGESLLVNES IDILLDDAVV SEKKVDGAVV SGKKVEETLI SGGTFDDKHP YCNEESTVND  360
GTSEFTFVNT TVAPIENKVT PGEFKGSETG QMVYELGMMQ RKECSGKIQK QIGHKNTVIE  420
TKLKKDVGLS NKKKQILNPA QKKEKKKKNK RKKRAEKNRQ LGVKRLKLQT VLKPKTVTYC  480
RHYLKGRCHE GEKCKFSHDT VPLTKSQPCS HFARQSCMKG DDCPFDHQLS KYPCINYTTK  540
GSCSRGDDCL FSHKKPLEGD VASLTVAPDL PLKSSLQSDS DVGLNISRAP PKNANALSYS  600
LGGFSDKSKK QIVADTPSKT PNLACKGVNS LFVSKSSIAE SIQLNQGSSS QKMNESGRVG  660
SQSNQRMLGV RGPASKPSVA ESSKFILGSS SLKMNGSGRL GIQGHQSESH KIQNGNDSPK  720
KKPEMVPRGI NFLSFGKSSL EDSTRKVSLA NGADGYKQQP SDIEGGGGKF SSQLTPSTSS  780
TDKKKSHPAV VPPGINLTLG KLVSSGSSTS SSLPNCSDNV NNGSLPKINY IAGEQRNSSA  840
MSYKLPVSPQ TSGQSSEWLA HKSTPNAREA LISTLAVAKK FDDVKGKSVH GSQQLSDKQF  900
NSNANPWKMP ASLLTTGQSS EKITPKSTPN SSQKALMSTL AFATMFEFGM KKNQSAIRTA  960
VNSETGDSRT GEGTKTDTAK TSKLLDILSS VGSKIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	431	453	KKKQILNPAQKKEKKKKNKRKKR
2	782	786	KKKSH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22341	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589643	7e-53	JX589643.1 Gossypium hirsutum clone NBRI_GE24379 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689866.1	0.0	PREDICTED: uncharacterized protein LOC107907134 isoform X2
Refseq	XP_016689867.1	0.0	PREDICTED: uncharacterized protein LOC107907134 isoform X2
Refseq	XP_016689868.1	0.0	PREDICTED: uncharacterized protein LOC107907134 isoform X2
Refseq	XP_016689869.1	0.0	PREDICTED: uncharacterized protein LOC107907134 isoform X2
TrEMBL	A0A1U8JNH9	0.0	A0A1U8JNH9_GOSHI; uncharacterized protein LOC107907134 isoform X2
STRING	Gorai.009G032200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17241	7	8