PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0307
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 447aa    MW: 50763.7 Da    PI: 4.6783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0307genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-351172082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk+ye++ed+ ++ ++sws n nsf+v+d+ +f++++LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF++++F++gkk+ll++ik
   Gh_D05G0307 117 FLKKTYEMVEDPVTDPIVSWSINRNSFIVWDSYKFSEDLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFANEEFQRGKKHLLKTIK 204
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Gh_D05G0307 205 RRSR 208
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.79E-33112206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-56113206IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-38113206IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-18117140IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-31117206IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18155167IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340156180IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18168180IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVVPDNGGGE GLCLSYSTAF SKKMGDEITQ IESNNILVKE EPIAETSGEE DNQEALLIKA  60
VKEEEEDDND DETGVVDDMM NGGDCNNVSN NGSSSSSSSV DLPKPMEGLN ESGPPPFLKK  120
TYEMVEDPVT DPIVSWSINR NSFIVWDSYK FSEDLLPKYF KHKNFSSFIR QLNTYGFRKI  180
DSDRWEFANE EFQRGKKHLL KTIKRRSRYN RQQQGGVNCA NNSTSNIGLE AEVEILKKDR  240
SILQLEVLKL RQQQEESNHQ LSAVHERIRF AECRQQQMCN FIAKIAKYPS FIHRLTKKRK  300
QQNIEIDEGE FSFSKKGKFL ETQVTKCLPE AMGMTDLSVK CRNQVNEERL KSIQAAEISK  360
LLPDYTEKNN NQTLHDEKSS EPAMSSVYDV MSENLLGESS GVENARNEEL SSVNDSKIYL  420
ELEDLISWKQ CSWGGFASEL VEQTGCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-26922064129Heat shock factor protein 1
5d5v_B6e-26922064129Heat shock factor protein 1
5d5v_D6e-26922064129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205LKTIKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674090.0KR067409.1 Gossypium hirsutum HSF28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689863.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_016689864.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A1U8JME10.0A0A1U8JME1_GOSHI; heat stress transcription factor A-7a-like
STRINGGorai.009G032300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-82heat shock transcription factor A2
Publications ? help Back to Top
  1. Wang J,Sun N,Deng T,Zhang L,Zuo K
    Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum).
    BMC Genomics, 2014. 15: p. 961
    [PMID:25378022]