PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0354
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 142aa    MW: 15704.4 Da    PI: 8.1986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0354genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-191363256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +ykGVr +k +g+WvAe+r p++   r r++lg++ taeeAa+a++aa  +l+g+
  Gh_D05G0354 13 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTAEEAARAYDAAVFCLRGN 63
                 69*****99.*******999843...48************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8791370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311371IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-221372IPR016177DNA-binding domain
SMARTSM003804.3E-351376IPR001471AP2/ERF domain
CDDcd000183.84E-271372No hitNo description
PfamPF008475.6E-131362IPR001471AP2/ERF domain
PRINTSPR003677.7E-101425IPR001471AP2/ERF domain
PRINTSPR003677.7E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVRPIGERDD GGRYKGVRMR KWGKWVAEVR QPNSRGRIWL GSYKTAEEAA RAYDAAVFCL  60
RGNSAKLNFP DNPPDIADAN ELTPDQIKEA AFRHARRDAG EEETEVAAAA AGNSYTECYF  120
GGGSVGDRSG RAYFHSPGVW TF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1712701372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.109193e-85root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9646415e-40JX964641.1 Gossypium hirsutum clone NBRI_TRANS-910 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445861.11e-101PREDICTED: ethylene-responsive transcription factor ERF017-like
RefseqXP_016689790.11e-101PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-35ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2UFW41e-100A0A0D2UFW4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JHM41e-100A0A1U8JHM4_GOSHI; ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2P5W3361e-100A0A2P5W336_GOSBA; Uncharacterized protein
STRINGGorai.009G037000.11e-101(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]