PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0434
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 323aa    MW: 35992.5 Da    PI: 9.6179
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0434genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35.1e-19191224134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Gh_D05G0434 191 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 224
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-19185237IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.086185221IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-13185226No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15189225IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.86E-13190220No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003208.4E-17191224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTPLYDLNSP PSPFPLEDLK HHHHHHHLQL FLSLPQHTAS SSSAHHPTFF SSTDAAATHK  60
PQEPKPYDLK VNNYVSHDGG GGSSDIQQAI SSSSSFLESA AVDLSLSRNR KDDGDDYESV  120
SDRNNGSSVE LKWMSSKMRL TKKMMMNSNC SGPPPLPHNK AAVNDSKYQY PIQDRDETNY  180
FSKTNNAIRV CSDCNTTTTP LWRSGPRGPK SLCNACGIRQ RKARRALEAA AANGETVAAS  240
MKIRVHHNKK EIKKSRTVGQ YKKELKSKSG NTCLHHHHHK RKLCFKEITL SLSKNSGLQR  300
VFPQDVEDAA ILLMELSCGL FHT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152501e-114JX615250.1 Gossypium hirsutum clone NBRI_GE59146 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689682.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A1U8JH820.0A0A1U8JH82_GOSHI; GATA transcription factor 21-like
STRINGGorai.009G045000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-27cytokinin-responsive gata factor 1