PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0463
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 362aa    MW: 40057.8 Da    PI: 7.983
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0463genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08125145526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G Ck Gd+C FaHg
  Gh_D05G0463 125 ACPDFRK-GSCKKGDSCEFAHG 145
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.43772109IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6120146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.83E-5120149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854121147IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23155179IPR000571Zinc finger, CCCH-type
SMARTSM0035620155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMIGESIQPN PTIKIPVGDP FNDPTASFPS VNFNYNNAVS SPCPVDYLGS LHRYLPSNDY  60
ESDSFSDDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGTACPDFR KGSCKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCQRR VCFFAHTPEQ  180
LRVLPQQSPR GNGSASADLD YVGSPMRHRL EFVSSPTSIL ASPPISPPSE SPPMSPSGSF  240
NSVSELAASM RSLQLGKSKM NGACSWGLQM GSGFSSPRGS TLRPGFCSSP STPTRTPTRS  300
SLGQFDIWEF NAVQEEPAME RVESGRDLRA RMYAKLSKEN SIGRHEPTGS GPDVGWVSEL  360
VK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.62000.0boll| leaf| ovule| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443397.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotO821991e-123C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0D2TJL30.0A0A0D2TJL3_GOSRA; Uncharacterized protein
STRINGGorai.009G047600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-114C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]